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Description
Electrical neural activity detection and tracking have many applications in medical research and brain computer interface technologies. In this thesis, we focus on the development of advanced signal processing algorithms to track neural activity and on the mapping of these algorithms onto hardware to enable real-time tracking. At the heart

Electrical neural activity detection and tracking have many applications in medical research and brain computer interface technologies. In this thesis, we focus on the development of advanced signal processing algorithms to track neural activity and on the mapping of these algorithms onto hardware to enable real-time tracking. At the heart of these algorithms is particle filtering (PF), a sequential Monte Carlo technique used to estimate the unknown parameters of dynamic systems. First, we analyze the bottlenecks in existing PF algorithms, and we propose a new parallel PF (PPF) algorithm based on the independent Metropolis-Hastings (IMH) algorithm. We show that the proposed PPF-IMH algorithm improves the root mean-squared error (RMSE) estimation performance, and we demonstrate that a parallel implementation of the algorithm results in significant reduction in inter-processor communication. We apply our implementation on a Xilinx Virtex-5 field programmable gate array (FPGA) platform to demonstrate that, for a one-dimensional problem, the PPF-IMH architecture with four processing elements and 1,000 particles can process input samples at 170 kHz by using less than 5% FPGA resources. We also apply the proposed PPF-IMH to waveform-agile sensing to achieve real-time tracking of dynamic targets with high RMSE tracking performance. We next integrate the PPF-IMH algorithm to track the dynamic parameters in neural sensing when the number of neural dipole sources is known. We analyze the computational complexity of a PF based method and propose the use of multiple particle filtering (MPF) to reduce the complexity. We demonstrate the improved performance of MPF using numerical simulations with both synthetic and real data. We also propose an FPGA implementation of the MPF algorithm and show that the implementation supports real-time tracking. For the more realistic scenario of automatically estimating an unknown number of time-varying neural dipole sources, we propose a new approach based on the probability hypothesis density filtering (PHDF) algorithm. The PHDF is implemented using particle filtering (PF-PHDF), and it is applied in a closed-loop to first estimate the number of dipole sources and then their corresponding amplitude, location and orientation parameters. We demonstrate the improved tracking performance of the proposed PF-PHDF algorithm and map it onto a Xilinx Virtex-5 FPGA platform to show its real-time implementation potential. Finally, we propose the use of sensor scheduling and compressive sensing techniques to reduce the number of active sensors, and thus overall power consumption, of electroencephalography (EEG) systems. We propose an efficient sensor scheduling algorithm which adaptively configures EEG sensors at each measurement time interval to reduce the number of sensors needed for accurate tracking. We combine the sensor scheduling method with PF-PHDF and implement the system on an FPGA platform to achieve real-time tracking. We also investigate the sparsity of EEG signals and integrate compressive sensing with PF to estimate neural activity. Simulation results show that both sensor scheduling and compressive sensing based methods achieve comparable tracking performance with significantly reduced number of sensors.
ContributorsMiao, Lifeng (Author) / Chakrabarti, Chaitali (Thesis advisor) / Papandreou-Suppappola, Antonia (Thesis advisor) / Zhang, Junshan (Committee member) / Bliss, Daniel (Committee member) / Kovvali, Narayan (Committee member) / Arizona State University (Publisher)
Created2013
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Description
Adaptive processing and classification of electrocardiogram (ECG) signals are important in eliminating the strenuous process of manually annotating ECG recordings for clinical use. Such algorithms require robust models whose parameters can adequately describe the ECG signals. Although different dynamic statistical models describing ECG signals currently exist, they depend considerably on

Adaptive processing and classification of electrocardiogram (ECG) signals are important in eliminating the strenuous process of manually annotating ECG recordings for clinical use. Such algorithms require robust models whose parameters can adequately describe the ECG signals. Although different dynamic statistical models describing ECG signals currently exist, they depend considerably on a priori information and user-specified model parameters. Also, ECG beat morphologies, which vary greatly across patients and disease states, cannot be uniquely characterized by a single model. In this work, sequential Bayesian based methods are used to appropriately model and adaptively select the corresponding model parameters of ECG signals. An adaptive framework based on a sequential Bayesian tracking method is proposed to adaptively select the cardiac parameters that minimize the estimation error, thus precluding the need for pre-processing. Simulations using real ECG data from the online Physionet database demonstrate the improvement in performance of the proposed algorithm in accurately estimating critical heart disease parameters. In addition, two new approaches to ECG modeling are presented using the interacting multiple model and the sequential Markov chain Monte Carlo technique with adaptive model selection. Both these methods can adaptively choose between different models for various ECG beat morphologies without requiring prior ECG information, as demonstrated by using real ECG signals. A supervised Bayesian maximum-likelihood (ML) based classifier uses the estimated model parameters to classify different types of cardiac arrhythmias. However, the non-availability of sufficient amounts of representative training data and the large inter-patient variability pose a challenge to the existing supervised learning algorithms, resulting in a poor classification performance. In addition, recently developed unsupervised learning methods require a priori knowledge on the number of diseases to cluster the ECG data, which often evolves over time. In order to address these issues, an adaptive learning ECG classification method that uses Dirichlet process Gaussian mixture models is proposed. This approach does not place any restriction on the number of disease classes, nor does it require any training data. This algorithm is adapted to be patient-specific by labeling or identifying the generated mixtures using the Bayesian ML method, assuming the availability of labeled training data.
ContributorsEdla, Shwetha Reddy (Author) / Papandreou-Suppappola, Antonia (Thesis advisor) / Chakrabarti, Chaitali (Committee member) / Kovvali, Narayan (Committee member) / Tepedelenlioğlu, Cihan (Committee member) / Arizona State University (Publisher)
Created2012
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Description
Audio signals, such as speech and ambient sounds convey rich information pertaining to a user’s activity, mood or intent. Enabling machines to understand this contextual information is necessary to bridge the gap in human-machine interaction. This is challenging due to its subjective nature, hence, requiring sophisticated techniques. This dissertation presents

Audio signals, such as speech and ambient sounds convey rich information pertaining to a user’s activity, mood or intent. Enabling machines to understand this contextual information is necessary to bridge the gap in human-machine interaction. This is challenging due to its subjective nature, hence, requiring sophisticated techniques. This dissertation presents a set of computational methods, that generalize well across different conditions, for speech-based applications involving emotion recognition and keyword detection, and ambient sounds-based applications such as lifelogging.

The expression and perception of emotions varies across speakers and cultures, thus, determining features and classification methods that generalize well to different conditions is strongly desired. A latent topic models-based method is proposed to learn supra-segmental features from low-level acoustic descriptors. The derived features outperform state-of-the-art approaches over multiple databases. Cross-corpus studies are conducted to determine the ability of these features to generalize well across different databases. The proposed method is also applied to derive features from facial expressions; a multi-modal fusion overcomes the deficiencies of a speech only approach and further improves the recognition performance.

Besides affecting the acoustic properties of speech, emotions have a strong influence over speech articulation kinematics. A learning approach, which constrains a classifier trained over acoustic descriptors, to also model articulatory data is proposed here. This method requires articulatory information only during the training stage, thus overcoming the challenges inherent to large-scale data collection, while simultaneously exploiting the correlations between articulation kinematics and acoustic descriptors to improve the accuracy of emotion recognition systems.

Identifying context from ambient sounds in a lifelogging scenario requires feature extraction, segmentation and annotation techniques capable of efficiently handling long duration audio recordings; a complete framework for such applications is presented. The performance is evaluated on real world data and accompanied by a prototypical Android-based user interface.

The proposed methods are also assessed in terms of computation and implementation complexity. Software and field programmable gate array based implementations are considered for emotion recognition, while virtual platforms are used to model the complexities of lifelogging. The derived metrics are used to determine the feasibility of these methods for applications requiring real-time capabilities and low power consumption.
ContributorsShah, Mohit (Author) / Spanias, Andreas (Thesis advisor) / Chakrabarti, Chaitali (Thesis advisor) / Berisha, Visar (Committee member) / Turaga, Pavan (Committee member) / Arizona State University (Publisher)
Created2015
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Description
Tracking a time-varying number of targets is a challenging

dynamic state estimation problem whose complexity is intensified

under low signal-to-noise ratio (SNR) or high clutter conditions.

This is important, for example, when tracking

multiple, closely spaced targets moving in the same direction such as a

convoy of low observable vehicles moving

Tracking a time-varying number of targets is a challenging

dynamic state estimation problem whose complexity is intensified

under low signal-to-noise ratio (SNR) or high clutter conditions.

This is important, for example, when tracking

multiple, closely spaced targets moving in the same direction such as a

convoy of low observable vehicles moving through a forest or multiple

targets moving in a crisscross pattern. The SNR in

these applications is usually low as the reflected signals from

the targets are weak or the noise level is very high.

An effective approach for detecting and tracking a single target

under low SNR conditions is the track-before-detect filter (TBDF)

that uses unthresholded measurements. However, the TBDF has only been used to

track a small fixed number of targets at low SNR.

This work proposes a new multiple target TBDF approach to track a

dynamically varying number of targets under the recursive Bayesian framework.

For a given maximum number of

targets, the state estimates are obtained by estimating the joint

multiple target posterior probability density function under all possible

target

existence combinations. The estimation of the corresponding target existence

combination probabilities and the target existence probabilities are also

derived. A feasible sequential Monte Carlo (SMC) based implementation

algorithm is proposed. The approximation accuracy of the SMC

method with a reduced number of particles is improved by an efficient

proposal density function that partitions the multiple target space into a

single target space.

The proposed multiple target TBDF method is extended to track targets in sea

clutter using highly time-varying radar measurements. A generalized

likelihood function for closely spaced multiple targets in compound Gaussian

sea clutter is derived together with the maximum likelihood estimate of

the model parameters using an iterative fixed point algorithm.

The TBDF performance is improved by proposing a computationally feasible

method to estimate the space-time covariance matrix of rapidly-varying sea

clutter. The method applies the Kronecker product approximation to the

covariance matrix and uses particle filtering to solve the resulting dynamic

state space model formulation.
ContributorsEbenezer, Samuel P (Author) / Papandreou-Suppappola, Antonia (Thesis advisor) / Chakrabarti, Chaitali (Committee member) / Bliss, Daniel (Committee member) / Kovvali, Narayan (Committee member) / Arizona State University (Publisher)
Created2015
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Description
Redundant Binary (RBR) number representations have been extensively used in the past for high-throughput Digital Signal Processing (DSP) systems. Data-path components based on this number system have smaller critical path delay but larger area compared to conventional two's complement systems. This work explores the use of RBR number representation for

Redundant Binary (RBR) number representations have been extensively used in the past for high-throughput Digital Signal Processing (DSP) systems. Data-path components based on this number system have smaller critical path delay but larger area compared to conventional two's complement systems. This work explores the use of RBR number representation for implementing high-throughput DSP systems that are also energy-efficient. Data-path components such as adders and multipliers are evaluated with respect to critical path delay, energy and Energy-Delay Product (EDP). A new design for a RBR adder with very good EDP performance has been proposed. The corresponding RBR parallel adder has a much lower critical path delay and EDP compared to two's complement carry select and carry look-ahead adder implementations. Next, several RBR multiplier architectures are investigated and their performance compared to two's complement systems. These include two new multiplier architectures: a purely RBR multiplier where both the operands are in RBR form, and a hybrid multiplier where the multiplicand is in RBR form and the other operand is represented in conventional two's complement form. Both the RBR and hybrid designs are demonstrated to have better EDP performance compared to conventional two's complement multipliers. The hybrid multiplier is also shown to have a superior EDP performance compared to the RBR multiplier, with much lower implementation area. Analysis on the effect of bit-precision is also performed, and it is shown that the performance gain of RBR systems improves for higher bit precision. Next, in order to demonstrate the efficacy of the RBR representation at the system-level, the performance of RBR and hybrid implementations of some common DSP kernels such as Discrete Cosine Transform, edge detection using Sobel operator, complex multiplication, Lifting-based Discrete Wavelet Transform (9, 7) filter, and FIR filter, is compared with two's complement systems. It is shown that for relatively large computation modules, the RBR to two's complement conversion overhead gets amortized. In case of systems with high complexity, for iso-throughput, both the hybrid and RBR implementations are demonstrated to be superior with lower average energy consumption. For low complexity systems, the conversion overhead is significant, and overpowers the EDP performance gain obtained from the RBR computation operation.
ContributorsMahadevan, Rupa (Author) / Chakrabarti, Chaitali (Thesis advisor) / Kiaei, Sayfe (Committee member) / Cao, Yu (Committee member) / Arizona State University (Publisher)
Created2011
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Description
Multidimensional (MD) discrete Fourier transform (DFT) is a key kernel algorithm in many signal processing applications, such as radar imaging and medical imaging. Traditionally, a two-dimensional (2-D) DFT is computed using Row-Column (RC) decomposition, where one-dimensional (1-D) DFTs are computed along the rows followed by 1-D DFTs along the columns.

Multidimensional (MD) discrete Fourier transform (DFT) is a key kernel algorithm in many signal processing applications, such as radar imaging and medical imaging. Traditionally, a two-dimensional (2-D) DFT is computed using Row-Column (RC) decomposition, where one-dimensional (1-D) DFTs are computed along the rows followed by 1-D DFTs along the columns. However, architectures based on RC decomposition are not efficient for large input size data which have to be stored in external memories based Synchronous Dynamic RAM (SDRAM). In this dissertation, first an efficient architecture to implement 2-D DFT for large-sized input data is proposed. This architecture achieves very high throughput by exploiting the inherent parallelism due to a novel 2-D decomposition and by utilizing the row-wise burst access pattern of the SDRAM external memory. In addition, an automatic IP generator is provided for mapping this architecture onto a reconfigurable platform of Xilinx Virtex-5 devices. For a 2048x2048 input size, the proposed architecture is 1.96 times faster than RC decomposition based implementation under the same memory constraints, and also outperforms other existing implementations. While the proposed 2-D DFT IP can achieve high performance, its output is bit-reversed. For systems where the output is required to be in natural order, use of this DFT IP would result in timing overhead. To solve this problem, a new bandwidth-efficient MD DFT IP that is transpose-free and produces outputs in natural order is proposed. It is based on a novel decomposition algorithm that takes into account the output order, FPGA resources, and the characteristics of off-chip memory access. An IP generator is designed and integrated into an in-house FPGA development platform, AlgoFLEX, for easy verification and fast integration. The corresponding 2-D and 3-D DFT architectures are ported onto the BEE3 board and their performance measured and analyzed. The results shows that the architecture can maintain the maximum memory bandwidth throughout the whole procedure while avoiding matrix transpose operations used in most other MD DFT implementations. The proposed architecture has also been ported onto the Xilinx ML605 board. When clocked at 100 MHz, 2048x2048 images with complex single-precision can be processed in less than 27 ms. Finally, transpose-free imaging flows for range-Doppler algorithm (RDA) and chirp-scaling algorithm (CSA) in SAR imaging are proposed. The corresponding implementations take advantage of the memory access patterns designed for the MD DFT IP and have superior timing performance. The RDA and CSA flows are mapped onto a unified architecture which is implemented on an FPGA platform. When clocked at 100MHz, the RDA and CSA computations with data size 4096x4096 can be completed in 323ms and 162ms, respectively. This implementation outperforms existing SAR image accelerators based on FPGA and GPU.
ContributorsYu, Chi-Li (Author) / Chakrabarti, Chaitali (Thesis advisor) / Papandreou-Suppappola, Antonia (Committee member) / Karam, Lina (Committee member) / Cao, Yu (Committee member) / Arizona State University (Publisher)
Created2012
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Description
Genomic and proteomic sequences, which are in the form of deoxyribonucleic acid (DNA) and amino acids respectively, play a vital role in the structure, function and diversity of every living cell. As a result, various genomic and proteomic sequence processing methods have been proposed from diverse disciplines, including biology, chemistry,

Genomic and proteomic sequences, which are in the form of deoxyribonucleic acid (DNA) and amino acids respectively, play a vital role in the structure, function and diversity of every living cell. As a result, various genomic and proteomic sequence processing methods have been proposed from diverse disciplines, including biology, chemistry, physics, computer science and electrical engineering. In particular, signal processing techniques were applied to the problems of sequence querying and alignment, that compare and classify regions of similarity in the sequences based on their composition. However, although current approaches obtain results that can be attributed to key biological properties, they require pre-processing and lack robustness to sequence repetitions. In addition, these approaches do not provide much support for efficiently querying sub-sequences, a process that is essential for tracking localized database matches. In this work, a query-based alignment method for biological sequences that maps sequences to time-domain waveforms before processing the waveforms for alignment in the time-frequency plane is first proposed. The mapping uses waveforms, such as time-domain Gaussian functions, with unique sequence representations in the time-frequency plane. The proposed alignment method employs a robust querying algorithm that utilizes a time-frequency signal expansion whose basis function is matched to the basic waveform in the mapped sequences. The resulting WAVEQuery approach is demonstrated for both DNA and protein sequences using the matching pursuit decomposition as the signal basis expansion. The alignment localization of WAVEQuery is specifically evaluated over repetitive database segments, and operable in real-time without pre-processing. It is demonstrated that WAVEQuery significantly outperforms the biological sequence alignment method BLAST for queries with repetitive segments for DNA sequences. A generalized version of the WAVEQuery approach with the metaplectic transform is also described for protein sequence structure prediction. For protein alignment, it is often necessary to not only compare the one-dimensional (1-D) primary sequence structure but also the secondary and tertiary three-dimensional (3-D) space structures. This is done after considering the conformations in the 3-D space due to the degrees of freedom of these structures. As a result, a novel directionality based 3-D waveform mapping for the 3-D protein structures is also proposed and it is used to compare protein structures using a matched filter approach. By incorporating a 3-D time axis, a highly-localized Gaussian-windowed chirp waveform is defined, and the amino acid information is mapped to the chirp parameters that are then directly used to obtain directionality in the 3-D space. This mapping is unique in that additional characteristic protein information such as hydrophobicity, that relates the sequence with the structure, can be added as another representation parameter. The additional parameter helps tracking similarities over local segments of the structure, this enabling classification of distantly related proteins which have partial structural similarities. This approach is successfully tested for pairwise alignments over full length structures, alignments over multiple structures to form a phylogenetic trees, and also alignments over local segments. Also, basic classification over protein structural classes using directional descriptors for the protein structure is performed.
ContributorsRavichandran, Lakshminarayan (Author) / Papandreou-Suppappola, Antonia (Thesis advisor) / Spanias, Andreas S (Thesis advisor) / Chakrabarti, Chaitali (Committee member) / Tepedelenlioğlu, Cihan (Committee member) / Lacroix, Zoé (Committee member) / Arizona State University (Publisher)
Created2011
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Description
Today's mobile devices have to support computation-intensive multimedia applications with a limited energy budget. In this dissertation, we present architecture level and algorithm-level techniques that reduce energy consumption of these devices with minimal impact on system quality. First, we present novel techniques to mitigate the effects of SRAM memory failures

Today's mobile devices have to support computation-intensive multimedia applications with a limited energy budget. In this dissertation, we present architecture level and algorithm-level techniques that reduce energy consumption of these devices with minimal impact on system quality. First, we present novel techniques to mitigate the effects of SRAM memory failures in JPEG2000 implementations operating in scaled voltages. We investigate error control coding schemes and propose an unequal error protection scheme tailored for JPEG2000 that reduces overhead without affecting the performance. Furthermore, we propose algorithm-specific techniques for error compensation that exploit the fact that in JPEG2000 the discrete wavelet transform outputs have larger values for low frequency subband coefficients and smaller values for high frequency subband coefficients. Next, we present use of voltage overscaling to reduce the data-path power consumption of JPEG codecs. We propose an algorithm-specific technique which exploits the characteristics of the quantized coefficients after zig-zag scan to mitigate errors introduced by aggressive voltage scaling. Third, we investigate the effect of reducing dynamic range for datapath energy reduction. We analyze the effect of truncation error and propose a scheme that estimates the mean value of the truncation error during the pre-computation stage and compensates for this error. Such a scheme is very effective for reducing the noise power in applications that are dominated by additions and multiplications such as FIR filter and transform computation. We also present a novel sum of absolute difference (SAD) scheme that is based on most significant bit truncation. The proposed scheme exploits the fact that most of the absolute difference (AD) calculations result in small values, and most of the large AD values do not contribute to the SAD values of the blocks that are selected. Such a scheme is highly effective in reducing the energy consumption of motion estimation and intra-prediction kernels in video codecs. Finally, we present several hybrid energy-saving techniques based on combination of voltage scaling, computation reduction and dynamic range reduction that further reduce the energy consumption while keeping the performance degradation very low. For instance, a combination of computation reduction and dynamic range reduction for Discrete Cosine Transform shows on average, 33% to 46% reduction in energy consumption while incurring only 0.5dB to 1.5dB loss in PSNR.
ContributorsEmre, Yunus (Author) / Chakrabarti, Chaitali (Thesis advisor) / Bakkaloglu, Bertan (Committee member) / Cao, Yu (Committee member) / Papandreou-Suppappola, Antonia (Committee member) / Arizona State University (Publisher)
Created2012
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Description
Object tracking is an important topic in multimedia, particularly in applications such as teleconferencing, surveillance and human-computer interface. Its goal is to determine the position of objects in images continuously and reliably. The key steps involved in object tracking are foreground detection to detect moving objects, clustering to enable representation

Object tracking is an important topic in multimedia, particularly in applications such as teleconferencing, surveillance and human-computer interface. Its goal is to determine the position of objects in images continuously and reliably. The key steps involved in object tracking are foreground detection to detect moving objects, clustering to enable representation of an object by its centroid, and tracking the centroids to determine the motion parameters.

In this thesis, a low cost object tracking system is implemented on a hardware accelerator that is a warp based processor for SIMD/Vector style computations. First, the different foreground detection techniques are explored to figure out the best technique that involves the least number of computations without compromising on the performance. It is found that the Gaussian Mixture Model proposed by Zivkovic gives the best performance with respect to both accuracy and number of computations. Pixel level parallelization is applied to this algorithm and it is mapped onto the hardware accelerator.

Next, the different clustering algorithms are studied and it is found that while DBSCAN is highly accurate and robust to outliers, it is very computationally intensive. In contrast, K-means is computationally simple, but it requires that the number of means to be specified beforehand. So, a new clustering algorithm is proposed that uses a combination of both DBSCAN and K-means algorithm along with a diagnostic algorithm on K-means to estimate the right number of centroids. The proposed hybrid algorithm is shown to be faster than the DBSCAN algorithm by ~2.5x with minimal loss in accuracy. Also, the 1D Kalman filter is implemented assuming constant acceleration model. Since the computations involved in Kalman filter is just a set of recursive equations, the sequential model in itself exhibits good performance, thereby alleviating the need for parallelization. The tracking performance of the low cost implementation is evaluated against the sequential version. It is found that the proposed hybrid algorithm performs very close to the reference algorithm based on the DBSCAN algorithm.
ContributorsSasikumar, Asha (Author) / Chakrabarti, Chaitali (Thesis advisor) / Ogras, Umit Y. (Committee member) / Suppapola, Antonia Pappandreau (Committee member) / Arizona State University (Publisher)
Created2015