Matching Items (3)
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- All Subjects: Monte Carlo method
- Creators: Kovvali, Narayan
- Member of: Theses and Dissertations
Description
Immunosignaturing is a medical test for assessing the health status of a patient by applying microarrays of random sequence peptides to determine the patient's immune fingerprint by associating antibodies from a biological sample to immune responses. The immunosignature measurements can potentially provide pre-symptomatic diagnosis for infectious diseases or detection of biological threats. Currently, traditional bioinformatics tools, such as data mining classification algorithms, are used to process the large amount of peptide microarray data. However, these methods generally require training data and do not adapt to changing immune conditions or additional patient information. This work proposes advanced processing techniques to improve the classification and identification of single and multiple underlying immune response states embedded in immunosignatures, making it possible to detect both known and previously unknown diseases or biothreat agents. Novel adaptive learning methodologies for un- supervised and semi-supervised clustering integrated with immunosignature feature extraction approaches are proposed. The techniques are based on extracting novel stochastic features from microarray binding intensities and use Dirichlet process Gaussian mixture models to adaptively cluster the immunosignatures in the feature space. This learning-while-clustering approach allows continuous discovery of antibody activity by adaptively detecting new disease states, with limited a priori disease or patient information. A beta process factor analysis model to determine underlying patient immune responses is also proposed to further improve the adaptive clustering performance by formatting new relationships between patients and antibody activity. In order to extend the clustering methods for diagnosing multiple states in a patient, the adaptive hierarchical Dirichlet process is integrated with modified beta process factor analysis latent feature modeling to identify relationships between patients and infectious agents. The use of Bayesian nonparametric adaptive learning techniques allows for further clustering if additional patient data is received. Significant improvements in feature identification and immune response clustering are demonstrated using samples from patients with different diseases.
ContributorsMalin, Anna (Author) / Papandreou-Suppappola, Antonia (Thesis advisor) / Bliss, Daniel (Committee member) / Chakrabarti, Chaitali (Committee member) / Kovvali, Narayan (Committee member) / Lacroix, Zoé (Committee member) / Arizona State University (Publisher)
Created2013
Description
Dynamic channel selection in cognitive radio consists of two main phases. The first phase is spectrum sensing, during which the channels that are occupied by the primary users are detected. The second phase is channel selection, during which the state of the channel to be used by the secondary user is estimated. The existing cognitive radio channel selection literature assumes perfect spectrum sensing. However, this assumption becomes problematic as the noise in the channels increases, resulting in high probability of false alarm and high probability of missed detection. This thesis proposes a solution to this problem by incorporating the estimated state of channel occupancy into a selection cost function. The problem of optimal single-channel selection in cognitive radio is considered. A unique approach to the channel selection problem is proposed which consists of first using a particle filter to estimate the state of channel occupancy and then using the estimated state with a cost function to select a single channel for transmission. The selection cost function provides a means of assessing the various combinations of unoccupied channels in terms of desirability. By minimizing the expected selection cost function over all possible channel occupancy combinations, the optimal hypothesis which identifies the optimal single channel is obtained. Several variations of the proposed cost-based channel selection approach are discussed and simulated in a variety of environments, ranging from low to high number of primary user channels, low to high levels of signal-to-noise ratios, and low to high levels of primary user traffic.
ContributorsZapp, Joseph (Author) / Papandreou-Suppappola, Antonia (Thesis advisor) / Kovvali, Narayan (Committee member) / Reisslein, Martin (Committee member) / Arizona State University (Publisher)
Created2014
Description
Camera calibration has applications in the fields of robotic motion, geographic mapping, semiconductor defect characterization, and many more. This thesis considers camera calibration for the purpose of high accuracy three-dimensional reconstruction when characterizing ball grid arrays within the semiconductor industry. Bouguet's calibration method is used following a set of criteria with the purpose of studying the method's performance according to newly proposed standards. The performance of the camera calibration method is currently measured using standards such as pixel error and computational time. This thesis proposes the use of standard deviation of the intrinsic parameter estimation within a Monte Carlo simulation as a new standard of performance measure. It specifically shows that the standard deviation decreases based on the increased number of images input into the calibration routine. It is also shown that the default thresholds of the non-linear maximum likelihood estimation problem of the calibration method require change in order to improve computational time performance; however, the accuracy lost is negligable even for high accuracy requirements such as ball grid array characterization.
ContributorsStenger, Nickolas Arthur (Author) / Papandreou-Suppappola, Antonia (Thesis advisor) / Kovvali, Narayan (Committee member) / Tepedelenlioğlu, Cihan (Committee member) / Arizona State University (Publisher)
Created2012