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- Creators: Guerrero, Anna
- Status: Published
In order to address this, multiple comparative genomics and bioinformatics analyses were conducted to elucidate patterns of evolution in the green anole and across multiple anole species. Comparative genomics analyses were used to infer additional X-linked loci in the green anole, RNAseq data from male and female samples were anayzed to quantify patterns of sex-biased gene expression across the genome, and the extent of dosage compensation on the anole X chromosome was characterized, providing evidence that the sex chromosomes in the green anole are dosage compensated.
In addition, X-linked genes have a lower ratio of nonsynonymous to synonymous substitution rates than the autosomes when compared to other Anolis species, and pairwise rates of evolution in genes across the anole genome were analyzed. To conduct this analysis a new pipeline was created for filtering alignments and performing batch calculations for whole genome coding sequences. This pipeline has been made publicly available.
Y-chromosomes exist in the body cells of many kinds of male animals. Found in the nucleus of most living animal cells, the X and Y-chromosomes are condensed structures made of DNA wrapped around proteins called histones. The individual histones bunch into groups that the coiled DNA wraps around called a nucleosome, which are roughly 10 nano-meters (nm) across. The histones bunch together to form a helical fiber (30 nm) that spins into a supercoil (200 nm). During much of a cell's life, DNA exists in the 200 nm supercoil phase. But when DNA replicates itself, supercoils condense further into visible chromosomes with diameters of about 1400 nm. The X- and Y-chromosomes carry the genetic information that determines the sex of many types of animals. The Y-chromosome contains a gene called the sex-determining region Y, or the SRY gene in humans. If a fertilized egg, called a zygote, has the SRY gene, the zygote develops normally into an adult organism with male sex traits. Zygotes without the SRY gene develop to have female traits. Zygotes with Y-chromosomes but mutated SRY genes can develop into adult organisms that have female traits.