Matching Items (9)
Filtering by
- Creators: Arizona State University
- Resource Type: Text
Description
Specificity and affinity towards a given ligand/epitope limit target-specific delivery. Companies can spend between $500 million to $2 billion attempting to discover a new drug or therapy; a significant portion of this expense funds high-throughput screening to find the most successful target-specific compound available. A more recent addition to discovering highly specific targets is the application of phage display utilizing single chain variable fragment antibodies (scFv). The aim of this research was to employ phage display to identify pathologies related to traumatic brain injury (TBI), particularly astrogliosis. A unique biopanning method against viable astrocyte cultures activated with TGF-β achieved this aim. Four scFv clones of interest showed varying relative affinities toward astrocytes. One of those four showed the ability to identify reactive astroctyes over basal astrocytes through max signal readings, while another showed a statistical significance in max signal reading toward basal astrocytes. Future studies will include further affinity characterization assays. This work contributes to the development of targeting therapeutics and diagnostics for TBI.
ContributorsMarsh, William (Author) / Stabenfeldt, Sarah (Thesis advisor) / Caplan, Michael (Committee member) / Sierks, Michael (Committee member) / Arizona State University (Publisher)
Created2013
Description
Research in microbial biofuels has dramatically increased over the last decade. The bulk of this research has focused on increasing the production yields of cyanobacteria and algal cells and improving extraction processes. However, there has been little to no research on the potential impact of viruses on the yields of these phototrophic microbes for biofuel production. Viruses have the potential to significantly reduce microbial populations and limit their growth rates. It is therefore important to understand how viruses affect phototrophic microbes and the prevalence of these viruses in the environment. For this study, phototrophic microbes were grown in glass bioreactors, under continuous light and aeration. Detection and quantification of viruses of both environmental and laboratory microbial strains were measured through the use of a plaque assay. Plates were incubated at 25º C under continuous direct florescent light. Several environmental samples were taken from Tempe Town Lake (Tempe, AZ) and all the samples tested positive for viruses. Virus free phototrophic microbes were obtained from plaque assay plates by using a sterile loop to scoop up a virus free portion of the microbial lawn and transferred into a new bioreactor. Isolated cells were confirmed virus free through subsequent plaque assays. Viruses were detected from the bench scale bioreactors of Cyanobacteria Synechocystis PCC 6803 and the environmental samples. Viruses were consistently present through subsequent passage in fresh cultures; demonstrating viral contamination can be a chronic problem. In addition TEM was performed to examine presence or viral attachment to cyanobacterial cells and to characterize viral particles morphology. Electron micrographs obtained confirmed viral attachment and that the viruses detected were all of a similar size and shape. Particle sizes were measured to be approximately 50-60 nm. Cell reduction was observed as a decrease in optical density, with a transition from a dark green to a yellow green color for the cultures. Phototrophic microbial viruses were demonstrated to persist in the natural environment and to cause a reduction in algal populations in the bioreactors. Therefore it is likely that viruses could have a significant impact on microbial biofuel production by limiting the yields of production ponds.
ContributorsKraft, Kyle (Author) / Abbaszadegan, Morteza (Thesis advisor) / Alum, Absar (Committee member) / Fox, Peter (Committee member) / Arizona State University (Publisher)
Created2014
Description
Due to depletion of oil resources, increasing fuel prices and environmental issues associated with burning of fossil fuels, extensive research has been performed in biofuel production and dramatic progress has been made. But still problems exist in economically production of biofuels. One major problem is recovery of biofuels from fermentation broth with the relatively low product titer achieved. A lot of in situ product recovery techniques including liquid-liquid extraction, membrane extraction, pervaporation, gas stripping and adsorption have been developed and adsorption is shown to be the most promising one compared to other methods. Yet adsorption is not perfect due to defect in adsorbents and operation method used. So laurate adsorption using polymer resins was first investigated by doing adsorption isotherm, kinetic, breakthrough curve experiment and column adsorption of laurate from culture. The results indicate that polymer resins have good capacity for laurate with the highest capacity of 430 g/kg achieved by IRA-402 and can successfully recover laurate from culture without causing problem to Synechocystis sp.. Another research of this paper focused on a novel adsorbent: magnetic particles by doing adsorption equilibrium, kinetic and toxicity experiment. Preliminary results showed excellent performance on both adsorption capacity and kinetics. But further experiment revealed that magnetic particles were toxicity and inhibited growth of all kinds of cell tested severely, toxicity probably comes from Co (III) in magnetic particles. This problem might be solved by either using biocompatible coatings or immobilization of cells, which needs more investigation.
ContributorsWang, Yuchen (Author) / Nielsen, David Ross (Thesis advisor) / Andino, Jean (Committee member) / Torres, Cesar (Committee member) / Arizona State University (Publisher)
Created2012
Description
Emergent environmental issues, ever-shrinking petroleum reserves, and rising fossil fuel costs continue to spur interest in the development of sustainable biofuels from renewable feed-stocks. Meanwhile, however, the development and viability of biofuel fermentations remain limited by numerous factors such as feedback inhibition and inefficient and generally energy intensive product recovery processes. To circumvent both feedback inhibition and recovery issues, researchers have turned their attention to incorporating energy efficient separation techniques such as adsorption in in situ product recovery (ISPR) approaches. This thesis focused on the characterization of two novel adsorbents for the recovery of alcohol biofuels from model aqueous solutions. First, a hydrophobic silica aerogel was evaluated as a biofuel adsorbent through characterization of equilibrium behavior for conventional second generation biofuels (e.g., ethanol and n-butanol). Longer chain and accordingly more hydrophobic alcohols (i.e., n-butanol and 2-pentanol) were more effectively adsorbed than shorter chain alcohols (i.e., ethanol and i-propanol), suggesting a mechanism of hydrophobic adsorption. Still, the adsorbed alcohol capacity at biologically relevant conditions were low relative to other `model' biofuel adsorbents as a result of poor interfacial contact between the aqueous and sorbent. However, sorbent wettability and adsorption is greatly enhanced at high concentrations of alcohol in the aqueous. Consequently, the sorbent exhibits Type IV adsorption isotherms for all biofuels studied, which results from significant multilayer adsorption at elevated alcohol concentrations in the aqueous. Additionally, sorbent wettability significantly affects the dynamic binding efficiency within a packed adsorption column. Second, mesoporous carbons were evaluated as biofuel adsorbents through characterization of equilibrium and kinetic behavior. Variations in synthetic conditions enabled tuning of specific surface area and pore morphology of adsorbents. The adsorbed alcohol capacity increased with elevated specific surface area of the adsorbents. While their adsorption capacity is comparable to polymeric adsorbents of similar surface area, pore morphology and structure of mesoporous carbons greatly influenced adsorption rates. Multiple cycles of adsorbent regeneration rendered no impact on adsorption equilibrium or kinetics. The high chemical and thermal stability of mesoporous carbons provide potential significant advantages over other commonly examined biofuel adsorbents. Correspondingly, mesoporous carbons should be further studied for biofuel ISPR applications.
ContributorsLevario, Thomas (Author) / Nielsen, David R (Thesis advisor) / Vogt, Bryan D (Committee member) / Lind, Mary L (Committee member) / Arizona State University (Publisher)
Created2011
Description
Organic reactions in natural hydrothermal settings have relevance toward the deep carbon cycle, petroleum formation, the ecology of deep microbial communities, and potentially the origin of life. Many reaction pathways involving organic compounds under geochemically relevant hydrothermal conditions have now been characterized, but their mechanisms, in particular those involving mineral surface catalysis, are largely unknown. The overall goal of this work is to describe these mechanisms so that predictive models of reactivity can be developed and so that applications of these reactions beyond geochemistry can be explored. The focus of this dissertation is the mechanisms of hydrothermal dehydration and catalytic hydrogenation reactions. Kinetic and structure/activity relationships show that elimination occurs mainly by the E1 mechanism for simple alcohols via homogeneous catalysis. Stereochemical probes show that hydrogenation on nickel occurs on the metal surface. By combining dehydration with and catalytic reduction, effective deoxygenation of organic structures with various functional groups such as alkenes, polyols, ketones, and carboxylic acids can be accomplished under hydrothermal conditions, using either nickel or copper-zinc alloy. These geomimetic reactions can potentially be used in biomass reduction to generate useful fuels and other high value chemicals. Through the use of earth-abundant metal catalysts, and water as the solvent, the reactions presented in this dissertation are a green alternative to current biomass deoxygenation/reduction methods, which often use exotic, rare-metal catalysts, and organic solvents.
ContributorsBockisch, Christiana (Author) / Gould, Ian R (Thesis advisor) / Hartnett, Hilairy E (Committee member) / Shock, Everett L (Committee member) / Arizona State University (Publisher)
Created2018
Description
This project aims to address the current protocol regarding the diagnosis and treatment of traumatic brain injury (TBI) in medical industries around the world. Although there are various methods used to qualitatively determine if TBI has occurred to a patient, this study attempts to aid in the creation of a system for quantitative measurement of TBI and its relative magnitude. Through a method of artificial evolution/selection called phage display, an antibody that binds highly specifically to a post-TBI upregulated brain chondroitin sulfate proteoglycan called neurocan has been identified. As TG1 Escheria Coli bacteria were infected with KM13 helper phage and M13 filamentous phage in conjunction, monovalent display of antibody fragments (ScFv) was performed. The ScFv bind directly to the neurocan and from screening, phage that produced ScFv's with higher affinity and specificity to neurocan were separated and purified. Future research aims to improve the ScFv characteristics through increased screening toward neurocan. The identification of a highly specific antibody could lead to improved targeting of neurocan post-TBI in-vivo, aiding researchers in quantitatively defining TBI by visualizing its magnitude.
ContributorsSeelig, Timothy Scott (Author) / Stabenfeldt, Sarah (Thesis director) / Ankeny, Casey (Committee member) / Barrett, The Honors College (Contributor) / Harrington Bioengineering Program (Contributor)
Created2015-05
Description
This thesis examines the use of the moisture swing resin materials employed at the Center for Negative Carbon Emissions (CNCE) in order to provide carbon dioxide from ambient air to photobioreactors containing extremophile cyanobacteria cultured at the Arizona Center for Algae Technology and Innovation (AzCATI). For this purpose, a carbon dioxide feeding device was designed, built, and tested. The results indicate how much resin should be used with a given volume of algae medium: approximately 500 grams of resin can feed 1% CO2 at about three liters per minute to a ten liter medium of the Galdieria sulphuraria 5587.1 strain for one hour (equivalent to about 0.1 grams of carbon dioxide per hour per seven grams of algae). Using the resin device, the algae grew within their normal growth range: 0.096 grams of ash-free dry weight per liter over a six hour period. Future applications in which the resin-to-algae process can be utilized are discussed.
ContributorsBeaubien, Courtney (Author) / Lackner, Klaus (Thesis advisor) / Lammers, Peter (Committee member) / Atkins, Steve (Committee member) / Arizona State University (Publisher)
Created2016
Description
In recent years, the world has debated the idea of biofuels as a solution to energy security, energy independence, and global climate change. However, as the biofuels movement has unfolded, crucial issues emerged regarding biofuels efficacy and efficiency. The deployment of biofuels of marginal benefit has raised questions about how countries like the USA may have found themselves so invested in a potentially failing technology. In order to better understand and evaluate these issues, this study utilizes the Ostrom Institutional Analysis and Development (IAD) framework to better evaluate these issues and analyze interacting institutions that shape US biofuel policy. The IAD framework is a model that enables one to study, conceptualize, compare, and make connections across decision arenas that would otherwise be distinct from each other. By analyzing the interactions of relevant institutions, one can see how different dynamic interests interacted to shape biofuel policy in the USA today. Conclusions from this analysis include: the IAD framework is ideal for analyzing the political and economic case for biofuels. The five action arenas identified in this thesis are sufficient to understand corn bioethanol policy. A compelling case for supporting bioethanol is not made. An international agreement to reduce GHG emissions could change the landscape for biofuels. Finally, there is little prospect for biofuels playing a significant role in the near term without greater alignment among the action arenas.
ContributorsDirks, Lisa Carrol (Author) / Wu, Jingle (Thesis advisor) / Anderies, John Marty (Committee member) / Rittmann, Bruce E. (Committee member) / Arizona State University (Publisher)
Created2010
Description
Drawn from a trio of manuscripts, this dissertation evaluates the sustainability contributions and implications of deploying underutilized spaces for alternative uses at multiple scales: urban, regional and continental. The first paper considers the use of underutilized spaces at the urban scale for urban agriculture (UA) to meet local sustainability goals in Phoenix, Arizona. Through a data-driven analysis, it demonstrates UA can meet 90% of annual demand for fresh produce, supply local produce in all food deserts, reduce areas underserved by public parks by 60%, and displace >50,000 tons of carbon-dioxide emissions from buildings.
The second paper considers marginal agricultural land use for bioenergy crop cultivation to meet future liquid fuels demand from cellulosic biofuels sustainably and profitably. At a wholesale fuel price of $4 gallons-of-gasoline-equivalent, 30 to 90.7 billion gallons of cellulosic biofuels can be supplied by converting 22 to 79.3 million hectares of marginal lands in the Eastern United States (U.S.). Displacing marginal croplands (9.4-13.7 million hectares) reduces stress on water resources by preserving soil moisture. This displacement is comparable to existing land use for first-generation biofuels, limiting food supply impacts. Coupled modeling reveals positive hydroclimate feedback on bioenergy crop yields that moderates the land footprint.
The third paper examines the sustainability implications of expanding use of marginal lands for corn cultivation in the Western Corn Belt, a commercially important and environmentally sensitive U.S. region. Corn cultivation on lower quality lands, which tend to overlap with marginal agricultural lands, is shown to be nearly three times more sensitive to changes in crop prices. Therefore, corn cultivation disproportionately expanded into these lands following price spikes.
Underutilized spaces can contribute towards sustainability at small and large scales in a complementary fashion. While supplying fresh produce locally and delivering other benefits in terms of energy use and public health, UA can also reduce pressures on croplands and complement non-urban food production. This complementarity can help diversify agricultural land use for meeting other goals, like supplying biofuels. However, understanding the role of market forces and economic linkages is critical to anticipate any unintended consequences due to such re-organization of land use.
The second paper considers marginal agricultural land use for bioenergy crop cultivation to meet future liquid fuels demand from cellulosic biofuels sustainably and profitably. At a wholesale fuel price of $4 gallons-of-gasoline-equivalent, 30 to 90.7 billion gallons of cellulosic biofuels can be supplied by converting 22 to 79.3 million hectares of marginal lands in the Eastern United States (U.S.). Displacing marginal croplands (9.4-13.7 million hectares) reduces stress on water resources by preserving soil moisture. This displacement is comparable to existing land use for first-generation biofuels, limiting food supply impacts. Coupled modeling reveals positive hydroclimate feedback on bioenergy crop yields that moderates the land footprint.
The third paper examines the sustainability implications of expanding use of marginal lands for corn cultivation in the Western Corn Belt, a commercially important and environmentally sensitive U.S. region. Corn cultivation on lower quality lands, which tend to overlap with marginal agricultural lands, is shown to be nearly three times more sensitive to changes in crop prices. Therefore, corn cultivation disproportionately expanded into these lands following price spikes.
Underutilized spaces can contribute towards sustainability at small and large scales in a complementary fashion. While supplying fresh produce locally and delivering other benefits in terms of energy use and public health, UA can also reduce pressures on croplands and complement non-urban food production. This complementarity can help diversify agricultural land use for meeting other goals, like supplying biofuels. However, understanding the role of market forces and economic linkages is critical to anticipate any unintended consequences due to such re-organization of land use.
ContributorsULUDERE ARAGON, Nazli Zeynep (Author) / Georgescu, Matei (Thesis advisor) / Hanemann, William M (Committee member) / Parker, Nathan C. (Committee member) / Rey, Sergio (Committee member) / Arizona State University (Publisher)
Created2020