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The explicit role of soil organisms in shaping soil health, rates of pedogenesis, and resistance to erosion has only just recently begun to be explored in the last century. However, much of the research regarding soil biota and soil processes is centered on maintaining soil fertility (e.g., plant nutrient availability)

The explicit role of soil organisms in shaping soil health, rates of pedogenesis, and resistance to erosion has only just recently begun to be explored in the last century. However, much of the research regarding soil biota and soil processes is centered on maintaining soil fertility (e.g., plant nutrient availability) and soil structure in mesic- and agro- ecosystems. Despite the empirical and theoretical strides made in soil ecology over the last few decades, questions regarding ecosystem function and soil processes remain, especially for arid areas. Arid areas have unique ecosystem biogeochemistry, decomposition processes, and soil microbial responses to moisture inputs that deviate from predictions derived using data generated in more mesic systems. For example, current paradigm predicts that soil microbes will respond positively to increasing moisture inputs in a water-limited environment, yet data collected in arid regions are not congruent with this hypothesis. The influence of abiotic factors on litter decomposition rates (e.g., photodegradation), litter quality and availability, soil moisture pulse size, and resulting feedbacks on detrital food web structure must be explicitly considered for advancing our understanding of arid land ecology. However, empirical data coupling arid belowground food webs and ecosystem processes are lacking. My dissertation explores the resource controls (soil organic matter and soil moisture) on food web network structure, size, and presence/absence of expected belowground trophic groups across a variety of sites in Arizona.
ContributorsWyant, Karl Arthur (Author) / Sabo, John L (Thesis advisor) / Elser, James J (Committee member) / Childers, Daniel L. (Committee member) / Hall, Sharon J (Committee member) / Stromberg, Juliet C. (Committee member) / Arizona State University (Publisher)
Created2014
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Description
Despite the breadth of studies investigating ecosystem development, an underlying theory guiding this process remains elusive. Several principles have been proposed to explain ecosystem development, though few have garnered broad support in the literature. I used boreal wetland soils as a study system to test a notable goal oriented principle:

Despite the breadth of studies investigating ecosystem development, an underlying theory guiding this process remains elusive. Several principles have been proposed to explain ecosystem development, though few have garnered broad support in the literature. I used boreal wetland soils as a study system to test a notable goal oriented principle: The Maximum Power Principle (MPP). The MPP posits that ecosystems, and in fact all energy systems, develop to maximize power production or the rate of energy production. I conducted theoretical and empirical investigations to test the MPP in northern wetlands.

Permafrost degradation is leading to rapid wetland formation in northern peatland ecosystems, altering the role of these ecosystems in the global carbon cycle. I reviewed the literature on the history of the MPP theory, including tracing its origins to The Second Law of Thermodynamics. To empirically test the MPP, I collected soils along a gradient of ecosystem development and: 1) quantified the rate of adenosine triphosphate (ATP) production--literally cellular energy--to test the MPP; 2) quantified greenhouse gas production (CO2, CH4, and N2O) and microbial genes that produce enzymes catalyzing greenhouse gas production, and; 3) sequenced the 16s rRNA gene from soil microbes to investigate microbial community composition across the chronosequence of wetland development. My results suggested that the MPP and other related theoretical constructs have strong potential to further inform our understanding of ecosystem development. Soil system power (ATP) decreased temporarily as the ecosystem reorganized after disturbance to rates of power production that approached pre-disturbance levels. Rates of CH4 and N2O production were higher at the newly formed bog and microbial genes involved with greenhouse gas production were strongly related to the amount of greenhouse gas produced. DNA sequencing results showed that across the chronosequence of development, the two relatively mature ecosystems--the peatland forest ecosystem prior to permafrost degradation and the oldest bog--were more similar to one another than to the intermediate, less mature bog. Collectively, my results suggest that ecosystem age, rather than ecosystem state, was a more important driver for ecosystem structure and function.
ContributorsChapman, Eric (Author) / Childers, Daniel L. (Thesis advisor) / Cadillo-Quiroz, Hinsby (Committee member) / Hall, Sharon J (Committee member) / Turetsky, Merritt (Committee member) / Arizona State University (Publisher)
Created2015
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Description

Humans have dramatically increased phosphorus (P) availability in terrestrial and aquatic ecosystems. As P is often a limiting nutrient of primary production, changes in its availability can have dramatic effects on ecosystem processes. I examined the effects of calcium carbonate (CaCO3) deposition, which can lower P concentrations via coprecipitation of

Humans have dramatically increased phosphorus (P) availability in terrestrial and aquatic ecosystems. As P is often a limiting nutrient of primary production, changes in its availability can have dramatic effects on ecosystem processes. I examined the effects of calcium carbonate (CaCO3) deposition, which can lower P concentrations via coprecipitation of phosphate, on P availability in two systems: streams in the Huachuca Mountains, Arizona, and a stream, Río Mesquites, in Cuatro Ciénegas, México. Calcium carbonate forms as travertine in the former and within the microbialites of the latter. Despite these differences, CaCO3 deposition led to lowered P availability in both systems. By analyzing a three-year dataset of water chemistry from the Huachuca Mountain streams, I determined that P concentrations were negatively related to CaCO3 deposition rates. I also discovered that CaCO3 was positively correlated with nitrogen concentrations, suggesting that the stoichiometric effect of CaCO3 deposition on nutrient availability is due not only to coprecipitation of phosphate, but also to P-related constraints on biotic nitrogen uptake. Building from these observations, bioassays of nutrient limitation of periphyton growth suggest that P limitation is more prevalent in streams with active CaCO3 deposition than those without. Furthermore, when I experimentally reduced rates of CaCO3 deposition within one of the streams by partial light-exclusion, areal P uptake lengths decreased, periphyton P content and growth increased, and periphyton nutrient limitation by P decreased. In Río Mesquites, CaCO3 deposition was also associated with P limitation of microbial growth. There, I investigated the consequences of reductions in CaCO3 deposition with several methods. Calcium removal led to increased concentrations of P in the microbial biomass while light reductions decreased microbial biomass and chemical inhibition had no effect. These results suggest that CaCO3 deposition in microbialites does limit biological uptake of P, that photoautotrophs play an important role in nutrient acquisition, and, combined with other experimental observations, that sulfate reduction may support CaCO3 deposition in the microbialite communities of Río Mesquites. Overall, my results suggest that the effects of CaCO3 deposition on P availability are general and this process should be considered when managing nutrient flows across aquatic ecosystems.

ContributorsCorman, Jessica R. (Author) / Elser, James J (Thesis advisor) / Anbar, Ariel D (Committee member) / Childers, Daniel L. (Committee member) / Grimm, Nancy (Committee member) / Souza, Valeria (Committee member) / Arizona State University (Publisher)
Created2015
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Description
In 2010, a monthly sampling regimen was established to examine ecological differences in Saguaro Lake and Lake Pleasant, two Central Arizona reservoirs. Lake Pleasant is relatively deep and clear, while Saguaro Lake is relatively shallow and turbid. Preliminary results indicated that phytoplankton biomass was greater by an order of magnitude

In 2010, a monthly sampling regimen was established to examine ecological differences in Saguaro Lake and Lake Pleasant, two Central Arizona reservoirs. Lake Pleasant is relatively deep and clear, while Saguaro Lake is relatively shallow and turbid. Preliminary results indicated that phytoplankton biomass was greater by an order of magnitude in Saguaro Lake, and that community structure differed. The purpose of this investigation was to determine why the reservoirs are different, and focused on physical characteristics of the water column, nutrient concentration, community structure of phytoplankton and zooplankton, and trophic cascades induced by fish populations. I formulated the following hypotheses: 1) Top-down control varies between the two reservoirs. The presence of piscivore fish in Lake Pleasant results in high grazer and low primary producer biomass through trophic cascades. Conversely, Saguaro Lake is controlled from the bottom-up. This hypothesis was tested through monthly analysis of zooplankton and phytoplankton communities in each reservoir. Analyses of the nutritional value of phytoplankton and DNA based molecular prey preference of zooplankton provided insight on trophic interactions between phytoplankton and zooplankton. Data from the Arizona Game and Fish Department (AZGFD) provided information on the fish communities of the two reservoirs. 2) Nutrient loads differ for each reservoir. Greater nutrient concentrations yield greater primary producer biomass; I hypothesize that Saguaro Lake is more eutrophic, while Lake Pleasant is more oligotrophic. Lake Pleasant had a larger zooplankton abundance and biomass, a larger piscivore fish community, and smaller phytoplankton abundance compared to Saguaro Lake. Thus, I conclude that Lake Pleasant was controlled top-down by the large piscivore fish population and Saguaro Lake was controlled from the bottom-up by the nutrient load in the reservoir. Hypothesis 2 stated that Saguaro Lake contains more nutrients than Lake Pleasant. However, Lake Pleasant had higher concentrations of dissolved nitrogen and phosphorus than Saguaro Lake. Additionally, an extended period of low dissolved N:P ratios in Saguaro Lake indicated N limitation, favoring dominance of N-fixing filamentous cyanobacteria in the phytoplankton community in that reservoir.
ContributorsSawyer, Tyler R (Author) / Neuer, Susanne (Thesis advisor) / Childers, Daniel L. (Committee member) / Sommerfeld, Milton (Committee member) / Arizona State University (Publisher)
Created2011
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Description
Often, when thinking of cities we envision designed landscapes, where people regulate everything from water to weeds, ultimately resulting in an ecosystem decoupled from biophysical processes. It is unclear, however, what happens when the people regulating these extensively managed landscapes come under stress, whether from unexpected economic fluctuations or from

Often, when thinking of cities we envision designed landscapes, where people regulate everything from water to weeds, ultimately resulting in an ecosystem decoupled from biophysical processes. It is unclear, however, what happens when the people regulating these extensively managed landscapes come under stress, whether from unexpected economic fluctuations or from changing climate norms. The overarching question of my dissertation research was: How does urban vegetation change in response to human behavior? To answer this question, I conducted multiscale research in an arid urban ecosystem as well as in a virtual desert city. I used a combination of long-term data and agent-based modeling to examine changes in vegetation across a range of measures influenced by biophysical, climate, institutional, and socioeconomic drivers. At the regional scale, total plant species diversity increased from 2000 to 2010, while species composition became increasingly homogeneous in urban and agricultural areas. At the residential scale, I investigated the effects of biophysical and socioeconomic drivers – the Great Recession of 2007-2010 in particular – on changing residential yard vegetation in Phoenix, AZ. Socioeconomic drivers affected plant composition and increasing richness, but the housing boom from 2000 through 2005 had a stronger influence on vegetation change than the subsequent recession. Surprisingly, annual plant species remained coupled to winter precipitation despite my expectation that their dynamics might be driven by socioeconomic fluctuations. In a modeling experiment, I examined the relative strength of psychological, social, and governance influences on large-scale urban land cover in a desert city. Model results suggested that social norms may be strong enough to lead to large-scale conversion to low water use residential landscaping, and governance may be unnecessary to catalyze residential landscape conversion under the pressure of extreme drought conditions. Overall, my dissertation research showed that urban vegetation is dynamic, even under the presumably stabilizing influence of human management activities. Increasing climate pressure, unexpected socioeconomic disturbances, growing urban populations, and shifting policies all contribute to urban vegetation dynamics. Incorporating these findings into planning policies will contribute to the sustainable management of urban ecosystems.
ContributorsRipplinger, Julie (Author) / Franklin, Janet (Thesis advisor) / Collins, Scott L. (Thesis advisor) / Anderies, John M (Committee member) / Childers, Daniel L. (Committee member) / York, Abigail (Committee member) / Arizona State University (Publisher)
Created2015
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Description
Cities are increasingly using nature-based approaches to address urban sustainability challenges. These solutions leverage the ecological processes associated with existing or newly constructed Urban Ecological Infrastructure (UEI) to address issues through ecosystem services (e.g. stormwater retention or treatment). The growing use of UEI to address urban sustainability challenges can bring

Cities are increasingly using nature-based approaches to address urban sustainability challenges. These solutions leverage the ecological processes associated with existing or newly constructed Urban Ecological Infrastructure (UEI) to address issues through ecosystem services (e.g. stormwater retention or treatment). The growing use of UEI to address urban sustainability challenges can bring together teams of urban researchers and practitioners to co-produce UEI design, monitoring and maintenance. However, this co-production process received little attention in the literature, and has not been studied in the Phoenix Metro Area.

I examined several components of a co-produced design process and related project outcomes associated with a small-scale UEI project – bioswales installed at the Arizona State University (ASU) Orange Mall and Student Pavilion in Tempe, AZ. Specifically, I explored the social design process and ecohydrological and biogeochemical outcomes associated with development of an ecohydrological monitoring protocol for assessing post-construction landscape performance of this site. The monitoring protocol design process was documented using participant observation of collaborative project meetings, and semi-structured interviews with key researchers and practitioners. Throughout this process, I worked together with researchers and practitioners to co-produced a suite of ecohydrological metrics to monitor the performance of the bioswales (UEI) constructed at Orange Mall, with an emphasis on understanding stormwater dynamics. I then installed and operated monitoring equipment from Summer 2018 to Spring 2019 to generate data that can be used to assess system performance with respect to the co-identified performance metrics.

The co-production experience resulted in observable change in attitudes both at the individual and institutional level with regards to the integration and use of urban ecological research to assess and improve UEI design. My ecological monitoring demonstrated that system performance met design goals with regards to stormwater capture, and water quality data suggest the system’s current design has some capacity for stormwater treatment. These data and results are being used by practitioners at ASU and their related design partners to inform future design and management of UEI across the ASU campus. More broadly, this research will provide insights into improving the monitoring, evaluation, and performance efficacy associated with collaborative stormwater UEI projects, independent of scale, in arid cities.
ContributorsSanchez, Christopher A (Author) / Childers, Daniel L. (Thesis advisor) / Cheng, Chingwen (Committee member) / York, Abigail M (Committee member) / Arizona State University (Publisher)
Created2019
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This paper explores the relationship between wildfire management and the consideration of ecological and environmental concerns in Arizona. To get a proper perspective on the current state of wildfire management in Arizona, information on two wildfire management programs, the Four Forests Restoration Initiative and FireScape, was researched and analyzed, as

This paper explores the relationship between wildfire management and the consideration of ecological and environmental concerns in Arizona. To get a proper perspective on the current state of wildfire management in Arizona, information on two wildfire management programs, the Four Forests Restoration Initiative and FireScape, was researched and analyzed, as well as contemporary fire policy, a history of wildfire in Arizona, and two recent fires in Sedona, AZ. The two fires in Sedona, the Brins Fire of 2006 and the Slide Fire of 2014, act as a focal point for this ecological management transition, as even within an 8-year period, we can see the different ways the two fires were managed and the transition to a greater ecological importance in management strategies. These all came together to give a full spectrum for the factors that have led to more ecologically-prominent wildfire management strategies in Arizona.
ContributorsGeorge-Sills, Dylan (Author) / Pyne, Stephen (Thesis director) / Hirt, Paul (Committee member) / Barrett, The Honors College (Contributor) / School of Life Sciences (Contributor) / School of Sustainability (Contributor)
Created2015-05
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Water is the main driver of net primary productivity (NPP) in arid ecosystems, followed by nitrogen and phosphorous. Precipitation is the primary factor in determining water availability to plants, but other factors such as surface rocks could also have an impact. Surface rocks may positively affect water availability by preventing

Water is the main driver of net primary productivity (NPP) in arid ecosystems, followed by nitrogen and phosphorous. Precipitation is the primary factor in determining water availability to plants, but other factors such as surface rocks could also have an impact. Surface rocks may positively affect water availability by preventing evaporation from soil, but at higher densities, surface rocks may also have a negative impact on water availability by limiting water infiltration or light availability. However, the direct relationship between rock cover and aboveground net primary productivity (ANPP), a proxy for NPP, is not well understood. In this research we explore the relationship between rock cover, ANPP, and soil nutrient availability. We conducted a rock cover survey on long-term fertilized plots at fifteen sites in the Sonoran Desert and used 4 years of data from annual plant biomass surveys to determine the relationship between peak plant biomass and surface rock cover. We performed factorial ANCOVA to assess the relationship among annual plant biomass, surface rocks, precipitation, and fertilization treatment. Overall we found that precipitation, nutrients, and rock cover influence growth of Sonoran Desert annual plants. Rock cover had an overall negative relationship with annual plant biomass, but did not show a consistent pattern of significance over four years of study and with varying average winter precipitation.
ContributorsShaw, Julea Anne (Author) / Hall, Sharon (Thesis director) / Sala, Osvaldo (Committee member) / Cook, Elizabeth (Committee member) / Barrett, The Honors College (Contributor) / School of Life Sciences (Contributor)
Created2015-05
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In today's world, critical thinking and using a systems approach to problem solving are skills that are far too rare. In the age of information, the truth has become muddled by "fake news" and a constant barrage of exaggerations or blatant falsehoods. Without critical thinking skills, "many members of our

In today's world, critical thinking and using a systems approach to problem solving are skills that are far too rare. In the age of information, the truth has become muddled by "fake news" and a constant barrage of exaggerations or blatant falsehoods. Without critical thinking skills, "many members of our society do not command the scientific literacy necessary to address important societal issues and concerns" (NCES 2012, p.11). Additionally, far too many people are incapable of thinking long term and understanding how their actions affect others. Because of this shortsightedness our world is facing one of its biggest ecological crises \u2014 global warming confounded by overpopulation and overconsumption. Now, more than ever, it is critical "for our young people to have a basic understanding of the relevant scientific ideas, technologies and ethical issues and powers of reasoning, to be prepared to face these issues" (Harlen et al., 2015). I believe that investigating innovative ways to teach ecology could be an important step to accomplishing this. Learning to think like a scientist forces people to rely on facts, follow similar protocols to deduce these facts, and be able to think critically about misleading events. More specifically, ecology education will allow people to develop those skills while also learning about team work, open-mindedness, and their environment. Ecology is defined as "the branch of biology that deals with the relations of organisms to one another and to their physical surroundings" (Dictionary.com, 2018). It is clear that this subcategory of science could act as a powerful introduction to the scientific world and how we relate to it. Its introduction at a young age has the potential to create a generation of conscientious and curious lifelong learners. In an attempt to support effective ways to teach ecology, I developed an educational unit and applied it in different educational contexts. My target audience was elementary aged students and I tested this unit with children in Phoenix Metropolitan Area afterschool programs. I taught core concepts of ecology \u2014 the water cycle, the sun's energy, plants and photosynthesis, and food webs \u2014in a sequence of lesson plans that build upon each other. Finally, I determined the appropriate age group and setting for these lesson plans through research and in-class observations. In this document, I explain the process I went through in developing my lesson plans, why I felt compelled to make them, and my experiences in implementing them.
ContributorsVotaw, Alexandra Lindsay (Author) / Larson, Kelli (Thesis director) / Herrmann, Lisa (Committee member) / York, Abigail (Committee member) / School of Art (Contributor) / The Design School (Contributor) / School of Life Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2018-05
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Peatlands are a type of wetlands where the rate of accumulation of organic matter exceed the rate of decomposition and have accumulated more than 30 cm of peat (Joosten and Clark, 2002). Peatlands store approximately 30% of all terrestrial carbon as recalcitrant peat, partially decomposed plant and microbial biomass, while

Peatlands are a type of wetlands where the rate of accumulation of organic matter exceed the rate of decomposition and have accumulated more than 30 cm of peat (Joosten and Clark, 2002). Peatlands store approximately 30% of all terrestrial carbon as recalcitrant peat, partially decomposed plant and microbial biomass, while simultaneously producing almost 40% of the globally emitted methane (Schmidt et al., 2016), making peatlands an important component of the carbon budgets. Published research indicates that the efficiency of carbon usage among microbial communities can determine the soil-carbon response to rising temperatures (Allison et al. 2010). By determining carbon consumption in peatland soils, total community respiration response, and community structure change with additions, models of carbon use efficiency in permafrost peatlands will be well-informed and have a better understanding of how the peatlands will respond to, and utilize, increased availability of carbon compounds due to the melting permafrost. To do this, we will sequence Lutose deep core samples to observe baseline microbial community structure at different depths and different age-gradients, construct substrate incubations of glucose and propionate and observe community respiration response via a gas chromatography flame ionization detector, track the glucose and propionate additions with high-performance liquid chromatography (HPLC), and sequence the samples once more to determine if there was a deviation from the initial community structure obtained prior to the incubations. We found that our initial sequencing data was supported by previous work (Lin et al., 2014), however we were unable to sequence samples post-incubation due to time constraints. In this sequencing analysis we found that the strongest variable that made samples biologically similar was the age-gradient site in which they were extracted. We found that the group with glucose additions produced the most carbon dioxide compared with the other treatments, but was not the treatment that dominated the production of methane. Finally, in the HPLC samples that were analyzed, we found that glucose is likely forming the most by-product accumulation from mass balance calculations, while propionate is likely forming the least. Future experimentation should focus on the shortcomings of this experiment. Further analysis of 16S rRNA sequencing data from after the incubations should be analyzed to determine the change in microbial community structure throughout the experiment. Furthermore, HPLC analysis for the several samples need to be done and followed up with mass balance to determine where the added glucose and propionate are being allocated within the soil. Once these pieces of the puzzle are put into place, our original question of how the microbial community structure changes at different depths and age-gradients within permafrost peatlands will be conclusively answered.
ContributorsFrese, Alexander Nicholas (Author) / Cadillo-Quiroz, Hinsby (Thesis director) / van Paassen, Leon (Committee member) / Sarno, Analissa (Committee member) / School of Life Sciences (Contributor) / School of Mathematical and Statistical Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2018-05