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White-nose syndrome (WNS) is a fungal infection devastating bat populations throughout eastern North America. WNS is caused by a fungus, Pseudogymnoascus destructans (Pd), that invades the skin of hibernating bats. While there are a number of treatments being researched, there is currently no effective treatment for WNS that is deployed

White-nose syndrome (WNS) is a fungal infection devastating bat populations throughout eastern North America. WNS is caused by a fungus, Pseudogymnoascus destructans (Pd), that invades the skin of hibernating bats. While there are a number of treatments being researched, there is currently no effective treatment for WNS that is deployed in the field, except a few being tested on a limited scale. Bats have lowered immune function and response during hibernation, which may increase susceptibility to infection during the winter months. Antimicrobial peptides (AMPs) are a crucial component of the innate immune system and serve as barriers against infection. AMPs are constitutively expressed on skin and facilitate wound healing, stimulate other immune responses, and may also stay active on bat skin during hibernation. AMPs are expressed by all tissues, have direct killing abilities against microbes, and are a potential treatment for bats infected with Pd. In this investigation, the fungicidal activity of several readily available commercial AMPs were compared, and killing assay protocols previously investigated by Frasier and Lake were replicated to establish a control trial for use in future killing assays. Another aim of this investigation was to synthesize a bat-derived AMP for use in the killing assay. Sequences of bat-derived AMPs have been identified in bat skin samples obtained from a large geographic sampling of susceptible and resistant species. Contact was made with GenScript Inc., the company from which commercially available AMPs were purchased, to determine the characteristics of peptide sequences needed to synthesize an AMP for lab use. Based on recommendations from GenScript Inc., peptide sequences need to have a hydrophobicity of less than 50% and a sequence length of less than 50 amino acids. These criteria serve as a potential barrier because none of the known bat-derived sequences analyzed satisfy both of these requirements. The final aim of this study was to generate a conceptual model of the immune response molecules activated when bats are exposed to a fungal pathogen such as Pd. Overall, this work investigated sources of variability between trials of the killing assay, analyzed known bat-derived peptide sequences, and generated a conceptual model that will serve as a guideline for identification of immune response molecules on the skin of bats in future proteomics work.
ContributorsBarton, Madisen L (Author) / Moore, Marianne (Thesis director) / Penton, Christopher (Committee member) / College of Integrative Sciences and Arts (Contributor) / Barrett, The Honors College (Contributor)
Created2019-05
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Description
As threats to Earth's biodiversity continue to evolve, an effective methodology to predict such threats is crucial to ensure the survival of living species. Organizations like the International Union for Conservation of Nature (IUCN) monitor the Earth's environmental networks to preserve the sanctity of terrestrial and marine life. The IUCN

As threats to Earth's biodiversity continue to evolve, an effective methodology to predict such threats is crucial to ensure the survival of living species. Organizations like the International Union for Conservation of Nature (IUCN) monitor the Earth's environmental networks to preserve the sanctity of terrestrial and marine life. The IUCN Red List of Threatened Species informs the conservation activities of governments as a world standard of species' risks of extinction. However, the IUCN's current methodology is, in some ways, inefficient given the immense volume of Earth's species and the laboriousness of its species' risk classification process. IUCN assessors can take years to classify a species' extinction risk, even as that species continues to decline. Therefore, to supplement the IUCN's classification process and thus bolster conservationist efforts for threatened species, a Random Forest model was constructed, trained on a group of fish species previously classified by the IUCN Red List. This Random Forest model both validates the IUCN Red List's classification method and offers a highly efficient, supplemental classification method for species' extinction risk. In addition, this Random Forest model is applicable to species with deficient data, which the IUCN Red List is otherwise unable to classify, thus engendering conservationist efforts for previously obscure species. Although this Random Forest model is built specifically for the trained fish species (Sparidae), the methodology can and should be extended to additional species.
ContributorsWoodyard, Megan (Author) / Broatch, Jennifer (Thesis director) / Polidoro, Beth (Committee member) / Mancenido, Michelle (Committee member) / School of Humanities, Arts, and Cultural Studies (Contributor) / School of Mathematical and Natural Sciences (Contributor) / College of Integrative Sciences and Arts (Contributor) / Barrett, The Honors College (Contributor)
Created2018-05
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Description
Phytohemagglutinin (PHA) is a plant lectin commonly used to stimulate and test responses of the immune system and is known to induce T cell proliferation, agglutinate human leukocytes, and yield adjustments in lymphocyte populations. What is not well know is how responses to PHA correlate with a host's ability to

Phytohemagglutinin (PHA) is a plant lectin commonly used to stimulate and test responses of the immune system and is known to induce T cell proliferation, agglutinate human leukocytes, and yield adjustments in lymphocyte populations. What is not well know is how responses to PHA correlate with a host's ability to resist or recover from pathogen invasion. This study uses information from previously published studies to determine whether or not PHA can be a good indicator of disease severity or disease resistance in a host. With PHA having the abilities that it does, immune responses to PHA may correlate with responses important for pathogen resistance and clearance. Such a relationship could only be uncovered if in vivo or in vitro responses to PHA are measured and, independent from the PHA challenge, symptoms and/or mortality rates of hosts are documented after pathogen exposure. An in vitro response can be detected by measuring cellular proliferation in response to PHA followed by separate cell cultures exposed to a pathogen. While an in vivo response can be detected by measuring variation in swelling in response to an injection of PHA. In reviewing a broad range of articles that meet my criteria, the majority of articles failed to show a strong relationship between PHA and disease severity or disease resistance. Therefore, immunologists must consider the usefulness of the PHA tests as a measure of immunocompetence, which is a host's ability to predict response to a pathogen. According to the literature, using PHA does not predict responses to pathogen invasion. However, it is possible that with carefully designed experiments, it could be determined that PHA does provide an indication of pathogen resistance in certain host species exposed to specific pathogen.
ContributorsMackey, Tracy Michelle (Author) / Moore, Marianne (Thesis director) / Penton, Ryan (Committee member) / College of Integrative Sciences and Arts (Contributor) / Barrett, The Honors College (Contributor)
Created2017-05
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Description

Vaccines are modern medicine’s best way of combating the majority of viral and bacterial illnesses and contagions to date. Thanks to the introduction of vaccines since the first uses of them in 1796 (Jenner’s smallpox vaccine), they have drastically reduced figures of disease worldwide, turning once lethal and life changing

Vaccines are modern medicine’s best way of combating the majority of viral and bacterial illnesses and contagions to date. Thanks to the introduction of vaccines since the first uses of them in 1796 (Jenner’s smallpox vaccine), they have drastically reduced figures of disease worldwide, turning once lethal and life changing conditions into minor annoyances; Some of these afflictions have even become nonexistent or even extinct in certain parts of the world outside of a controlled laboratory setting. With many advancements and overwhelming evidence proving their efficiency, it is clear that vaccines have become nothing less than a necessity for everyday healthcare in today’s world. <br/>The greatest contributor to the creation and evolution of vaccines throughout the years is by far the progress and work done in the field of molecular and cellular biology. These advancements have become the bedrock of modern vaccination, as shown by the differing types of vaccines and their methodology. The most common varieties of vaccines are include ‘dead’ or inactivated vaccines, one such example being the pertussis strain of vaccines, which have either dead or torn apart cells for the body to easily fight off, allowing the immune system to easily and quickly counter the illness; Additionally, there are also live attenuated vaccines (LAVs) in which a weaker version of the pathogen is introduced to the body to stimulate an immune response, or a recombinant mRNA vaccine where mRNA containing the coding for an antigen is presented for immunological response, the latter being what the current COVID-19 vaccines are based on. This is in part aided by the presence of immunological adjuvants, antigens and substances that the immune system can recognize, target, and remember for future infections. However, for more serious illnesses the body needs a bigger threat to analyze, which leads to live vaccines- instead of dead or individual components of a potential pathogen, a weakened version is created in the lab to allow the body to combat it. The idea behind this is the same, but to a larger degree so a more serious illness such as measles, mumps, and rubella (MMR) do not infect us.<br/>However, for the past couple of decades the public’s views on vaccination has greatly varied, with the rise of fear and disinformation leading those to believe that modern medicine is a threat in disguise. The largest of these arguments began in the late 90’s, when Dr. Andrew Wakefield published an article under the Lancet with false information connecting vaccinations to the occurrence of autism in younger children- a theory which has since then been proven incorrect numerous times over. Unfortunately, the rise of hysteria and paranoia in people, along with more misinformation from misleading sources, have strengthened the anti-vaccination cause and has made it into a serious threat to the health of those world-wide.<br/>The aim of this thesis is to provide an accurate and thorough analysis on these three themes- the history of vaccines, their inner workings and machinations in providing immune defenses for the body, and the current controversy of the anti-vaccination movement. Additionally, there will be two other sections going in-depth on two specific areas where vaccination is highly important; The spread and fear of the Human Immunodeficiency Virus (HIV) has been around for nearly four decades, so it begs the question: what makes this such a difficult virus, and how can a vaccine be created to combat it? Additionally, in the last year the world has encountered a new virus that has evolved into a global pandemic, SARS-COV 2. This new strain of coronavirus has shown itself to be highly contagious and rapidly mutating, and the race to quickly develop a vaccine to counteract it has been on-going since its first major infections in Wuhan, China. Overall, this thesis will go in-depth in providing the most accurate, up-to-date, and critical information regarding vaccinations today.

ContributorsKolb Celaya, Connor Emilio (Author) / Topal, Emel (Thesis director) / Huffman, Holly (Committee member) / College of Integrative Sciences and Arts (Contributor) / School of International Letters and Cultures (Contributor) / Barrett, The Honors College (Contributor)
Created2021-05
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Description

As the world’s population exponentially grows, more food production is required. This increasing food production currently has led to the un-sustainable production of chemical fertilizers and resultant overuse. A more sustainable option to enhance food production could be the use of fertilizer derived from food waste. To address this, we

As the world’s population exponentially grows, more food production is required. This increasing food production currently has led to the un-sustainable production of chemical fertilizers and resultant overuse. A more sustainable option to enhance food production could be the use of fertilizer derived from food waste. To address this, we investigated the possibility of utilizing a fertilizer derived from food waste to grow hydroponic vegetables. Arugula (Eruca sativa) ‘Slow Bolt’ and lettuce (Lactuca sativa) ‘Cherokee’ and ‘Rex’ were cultivated using indoor deep-flow hydroponic systems at 23 ºC under a photosynthetic photon flux density of 170 µmol∙m−2∙s−1 with an 18-hour photoperiod. Plant nutrient solutions were provided by food waste fertilizer or commercial 15:5:20 NPK fertilizer at the identical electrical conductivity (EC) of 2.3 mS·cm–1. At the EC of 2.3 mS·cm–1, chemical fertilizer contained 150 ppm N, 50 ppm P, and 200 ppm K, while food waste fertilizer had 60 ppm N, 26 ppm P, and 119 ppm K. Four weeks after the nutrient treatments were implemented, compared to plants grown with chemical fertilizer, lettuce ‘Rex’ grown with food waste fertilizer had four less leaves, 27.1% shorter leaves, 68.2% and 23.1% less shoot and root fresh weight, respectively. Lettuce ‘Cherokee’ and arugula grown with food waste fertilizer followed a similar trend with fresh shoot weights that were 80.1% and 95.6% less compared to the chemical fertilizer, respectively. In general, the magnitude of reduction in the plant growth was greatest in arugula. These results suggest that both fertilizers were able to successfully grow lettuce and arugula, although the reduced plant growth with the food waste fertilizer in our study is likely from a lower concentration of nutrients when we considered EC as an indicator of nutrient concentration equivalency of the two fertilizer types.

ContributorsCherry, Hannah Nichole (Author) / Park, Yujin (Thesis director) / Penton, Ryan (Committee member) / Chen, Zhihao (Committee member) / Environmental and Resource Management (Contributor, Contributor) / College of Integrative Sciences and Arts (Contributor) / Barrett, The Honors College (Contributor)
Created2021-05
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Description

The United States’ War on Drugs declared in 1971 by President Richard Nixon and revamped by President Reagan in the 1980s has been an objectively failed initiative with origins based in racism and oppression. After exploring the repercussions of this endeavor for societies and individuals around the world, global researchers

The United States’ War on Drugs declared in 1971 by President Richard Nixon and revamped by President Reagan in the 1980s has been an objectively failed initiative with origins based in racism and oppression. After exploring the repercussions of this endeavor for societies and individuals around the world, global researchers and policymakers have declared that the policies and institutions created to fight the battle have left devastation in their wake. Despite high economic and social costs, missed opportunities in public health and criminal justice sectors, and increasing limits on our personal freedoms, all the measures taken to eradicate drug abuse and trafficking have been unsuccessful. Not only that, but militarized police tactics, mass incarceration, and harsh penalties that stifle opportunities for rehabilitation, growth, and change disproportionately harm poor and minority communities. <br/>Because reform in U.S. drug policy is badly needed, the goals of America’s longest war need to be reevaluated, implications of the initiative reexamined, and alternative strategies reconsidered. Solutions must be propagated from a diverse spectrum of contributors and holistic understanding through scientific research, empirical evidence, innovation, public health, social wellbeing, and measurable outcomes. But before we can know where we should be headed, we need to appreciate how we got to where we are. This preliminary expository investigation will explore and outline the history of drug use and prohibition in the United States before the War on Drugs was officially declared. Through an examination of the different patterns of substance use, evolving civil tolerance of users, racially-charged anti-drug misinformation/propaganda campaigns, and increasingly restrictive drug control policies, a foundation for developing solutions and strengths-based strategies for drug reform will emerge.

ContributorsSherman, Brooke (Author) / Jimenez-Arista, Laura (Thesis director) / Mitchell, Ojmarrh (Committee member) / College of Integrative Sciences and Arts (Contributor) / Department of Psychology (Contributor) / Barrett, The Honors College (Contributor)
Created2021-05
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Description
The Salt River wild horses are a historic population of unbranded, unclaimed, wild and free-roaming horses, that were born in the wild and merit protection within our National Forest and protection of the Wild Horse and Burro act of 1970. Terms like undomesticated or feral are thrown around in place

The Salt River wild horses are a historic population of unbranded, unclaimed, wild and free-roaming horses, that were born in the wild and merit protection within our National Forest and protection of the Wild Horse and Burro act of 1970. Terms like undomesticated or feral are thrown around in place of “wild”. The past couple of decades or so, there has been an ongoing debate about the current state of the horses on the range. The horses that are along the Salt River, are considered to be state protected and not federally protected, which has sparked a vast discussion on the social, ethical and moral aspects. There has been an overabundance of horses on the range and are causing potential issues to the environment and other farmland. According to the BLM, wild horse and burro populations have a demonstrated ability to grow at 18-20 percent per year. With the widespread and overabundance that is occurring with the horses and burros, it has been said to have a great ecological cost on the rangeland ecosystem by overgrazing native plants, exacerbating invasive establishment and out-competing other ungulates like cattle. Overabundant free-roaming horse and burro populations have large and growing economic and ecological costs for the American public. Without effective management actions, horse and burro populations will double within the next 4-5 years. In this project, with the help of Dr. Julie Murphree, the Salt River Horse Management group and Arizona’s State Liaison for the Department of Agriculture, I conducted various ride-a-longs and conducted my own literature study to further solidify the knowledge I gained when navigating through the Salt River Wild Horse Management group. I can use their data as well as my own observations in the field to catalog their behaviors and look for any signs that would give reason to why this method of population control may or may not be used. I was able to note the horses in their “natural state” which would give me the opportunity to see any behavior changes in various population groups (or otherwise known as Bands). The main objective of this paper is to understand PZP as a population control tool and the effect it has on the Salt River Horses in Arizona.
ContributorsRendon, Chyna (Author) / Murphree, Julie (Thesis director) / Saul, Steven (Committee member) / Barrett, The Honors College (Contributor) / College of Integrative Sciences and Arts (Contributor)
Created2022-05
Description
The use of genetic management in conservation has sparked much debate around the ethical and environmental impacts of the plans. A case study on the conservation of leopard frogs in Arizona was analyzed to better understand the benefits and issues surrounding genetic management plans. The first part of the case

The use of genetic management in conservation has sparked much debate around the ethical and environmental impacts of the plans. A case study on the conservation of leopard frogs in Arizona was analyzed to better understand the benefits and issues surrounding genetic management plans. The first part of the case focuses on the recent management plan for Chiricahua Leopard Frogs implemented by the Arizona Game and Fish Department. The goal of the plan is to better understand the genetic dynamics of the established Chiricahua Leopard Frog populations to develop a more effective management plan. The second part of the case focuses on the Arizona Game and Fish Department’s management of the Northern Leopard Frog. There was little success with the initial breed and release program of the native species, however a nonnative subspecies of Northern Leopard Frog was able to establish a thriving population. This case study exemplifies the many complications with genetic management plans and the importance of careful assessment of options when deciding on a genetic management plan. Despite the complexity of genetic management plans, it is an important method to consider when discussing the conservation of a species.
ContributorsTurpen, Alexa (Author) / Murphree, Julie (Thesis director) / Collins, James (Thesis director) / Owens, Audrey (Committee member) / Barrett, The Honors College (Contributor) / School of Life Sciences (Contributor) / College of Integrative Sciences and Arts (Contributor) / School of Mathematical and Natural Sciences (Contributor)
Created2024-05
Description
My thesis/creative project is a series of videos, supplemented by a paper documenting all the research. The project focuses on domestic and feral cats through the viewpoint of the “warrior cats” book series. The use of a particular fandom as a vehicle for science communication is a unique platform for

My thesis/creative project is a series of videos, supplemented by a paper documenting all the research. The project focuses on domestic and feral cats through the viewpoint of the “warrior cats” book series. The use of a particular fandom as a vehicle for science communication is a unique platform for use as a thesis/creative project. The narrated videos are made with the intention of being presented on YouTube or a similar viewing platform to an audience that is already familiar with the book series. The videos would fit on the site as a form of educational film known as video essays. The videos cover a range of topics to relate this book series to real situations with domestic animals, particularly cats, and wildlife. Each video is around ten to twenty minutes long and presented as episodes in a series.
The objective of my thesis project is to help bridge the gap between entertainment and science. I grew up reading the warrior cats, and I assume I was similar to many other children and young teens who did not understand domestic cats or ecology enough to question anything in the books. I know that much of these books are fictional, but that does not mean that it can’t be analyzed and used as a tool for teaching. The goal is to reach common ground with those people who have an interest in the warrior cats series, and help them understand it in a new light, as well as the world around them. I aim for the takeaway of this series to encourage people to explore the concepts I discuss and consider expanding upon the ideas within the Warriors universe or with their own cats.
ContributorsGarcia, Johnny Nico (Author) / Bateman, Heather (Thesis director) / Meloy, Elizabeth (Committee member) / College of Integrative Sciences and Arts (Contributor, Contributor) / School of Art (Contributor) / Barrett, The Honors College (Contributor)
Created2020-05
Description
The Tale of the Tigers is a children’s picture book in which a tiger named Guava is transported from his world of Serenia to our world. In an attempt to find someone to help him with this situation, Guava meets another tiger named Papaya. After having his prey scared away

The Tale of the Tigers is a children’s picture book in which a tiger named Guava is transported from his world of Serenia to our world. In an attempt to find someone to help him with this situation, Guava meets another tiger named Papaya. After having his prey scared away by Guava, Papaya begins to explain the different hardships and dangers that tigers face in their natural habitat. Papaya also teaches Guava about the different programs and activities that humans have been doing to help increase and restore tiger populations. At the end of the story, Guava returns to his world and spreads awareness to those that live in Serenia about how tigers are threatened in other places and what’s being done to help them. Papaya uses basic ecological concepts to explain the importance of tigers in their ecosystem. These concepts include habitat loss, trophic levels, landscape fragmentation, and poaching. The story also incorporates different conservation methods, including captive breeding and the use of camera traps.
ContributorsMooney, Lena (Author) / Jesse, Lewis (Thesis director) / Meloy, Elizabeth (Committee member) / College of Integrative Sciences and Arts (Contributor, Contributor) / Barrett, The Honors College (Contributor)
Created2020-05