Though cities occupy only a small percentage of Earth's terrestrial surface, humans concentrated in urban areas impact ecosystems at local, regional and global scales. I examined the direct and indirect ecological outcomes of human activities on both managed landscapes and protected native ecosystems in and around cities. First, I used highly managed residential yards, which compose nearly half of the heterogeneous urban land area, as a model system to examine the ecological effects of people's management choices and the social drivers of those decisions. I found that a complex set of individual and institutional social characteristics drives people's decisions, which in turn affect ecological structure and function across scales from yards to cities. This work demonstrates the link between individuals' decision-making and ecosystem service provisioning in highly managed urban ecosystems.

Second, I examined the distribution of urban-generated air pollutants and their complex ecological outcomes in protected native ecosystems. Atmospheric carbon dioxide (CO₂), reactive nitrogen (N), and ozone (O₃) are elevated near human activities and act as both resources and stressors to primary producers, but little is known about their co-occurring distribution or combined impacts on ecosystems. I investigated the urban "ecological airshed," including the spatial and temporal extent of N deposition, as well as CO₂ and O₃ concentrations in native preserves in Phoenix, Arizona and the outlying Sonoran Desert. I found elevated concentrations of ecologically relevant pollutants co-occur in both urban and remote native lands at levels that are likely to affect ecosystem structure and function. Finally, I tested the combined effects of CO₂, N, and O₃ on the dominant native and non-native herbaceous desert species in a multi-factor dose-response greenhouse experiment. Under current and predicted future air quality conditions, the non-native species (Schismus arabicus) had net positive growth despite physiological stress under high O₃ concentrations. In contrast, the native species (Pectocarya recurvata) was more sensitive to O₃ and, unlike the non-native species, did not benefit from the protective role of CO₂. These results highlight the vulnerability of native ecosystems to current and future air pollution over the long term. Together, my research provides empirical evidence for future policies addressing multiple stressors in urban managed and native landscapes.

Non-native consumers can significantly alter processes at the population, community, and ecosystem level, and they are a major concern in many aquatic systems. Although the community-level effects of non-native anuran tadpoles are well understood, their ecosystem-level effects have been less studied. Here, I tested the hypothesis that natural densities of non-native bullfrog tadpoles (Lithobates catesbeianus) and native Woodhouse's toad tadpoles (Anaxyrus woodhousii) have dissimilar effects on aquatic ecosystem processes because of differences in grazing and nutrient recycling (excretion and egestion). I measured bullfrog and Woodhouse's carbon, nitrogen, and phosphorus nutrient recycling rates. Then, I determined the impact of tadpole grazing on periphyton biomass (chlorophyll a) during a 39-day mesocosm experiment. Using the same experiment, I also quantified the effect of tadpole grazing and nutrient excretion on periphyton net primary production (NPP). Lastly I measured how dissolved and particulate nutrient concentrations and respiration rates changed in the presence of the two tadpole species. Per unit biomass, I found that bullfrog and Woodhouse's tadpoles excreted nitrogen and phosphorus at similar rates, though Woodhouse's tadpoles egested more carbon, nitrogen, and phosphorus. However, bullfrogs recycled nutrients at higher N:C and N:P ratios. Tadpole excretion did not cause a detectable change in dissolved nutrient concentrations. However, the percent phosphorus in mesocosm detritus was significantly higher in both tadpole treatments, compared to a tadpole-free control. Neither tadpole species decreased periphyton biomass through grazing, although bullfrog nutrient excretion increased areal NPP. This result was due to higher biomass, not higher biomass-specific productivity. Woodhouse's tadpoles significantly decreased respiration in the mesocosm detritus, while bullfrog tadpoles had no effect. This research highlights functional differences between species by showing non-native bullfrog tadpoles and native Woodhouse's tadpoles may have different effects on arid, aquatic ecosystems. Specifically, it indicates bullfrog introductions may alter primary productivity and particulate nutrient dynamics.

Humans have dramatically increased phosphorus (P) availability in terrestrial and aquatic ecosystems. As P is often a limiting nutrient of primary production, changes in its availability can have dramatic effects on ecosystem processes. I examined the effects of calcium carbonate (CaCO3) deposition, which can lower P concentrations via coprecipitation of phosphate, on P availability in two systems: streams in the Huachuca Mountains, Arizona, and a stream, Río Mesquites, in Cuatro Ciénegas, México. Calcium carbonate forms as travertine in the former and within the microbialites of the latter. Despite these differences, CaCO3 deposition led to lowered P availability in both systems. By analyzing a three-year dataset of water chemistry from the Huachuca Mountain streams, I determined that P concentrations were negatively related to CaCO3 deposition rates. I also discovered that CaCO3 was positively correlated with nitrogen concentrations, suggesting that the stoichiometric effect of CaCO3 deposition on nutrient availability is due not only to coprecipitation of phosphate, but also to P-related constraints on biotic nitrogen uptake. Building from these observations, bioassays of nutrient limitation of periphyton growth suggest that P limitation is more prevalent in streams with active CaCO3 deposition than those without. Furthermore, when I experimentally reduced rates of CaCO3 deposition within one of the streams by partial light-exclusion, areal P uptake lengths decreased, periphyton P content and growth increased, and periphyton nutrient limitation by P decreased. In Río Mesquites, CaCO3 deposition was also associated with P limitation of microbial growth. There, I investigated the consequences of reductions in CaCO3 deposition with several methods. Calcium removal led to increased concentrations of P in the microbial biomass while light reductions decreased microbial biomass and chemical inhibition had no effect. These results suggest that CaCO3 deposition in microbialites does limit biological uptake of P, that photoautotrophs play an important role in nutrient acquisition, and, combined with other experimental observations, that sulfate reduction may support CaCO3 deposition in the microbialite communities of Río Mesquites. Overall, my results suggest that the effects of CaCO3 deposition on P availability are general and this process should be considered when managing nutrient flows across aquatic ecosystems.

Constructed treatment wetlands (CTW) have been a cost-efficient technological solution to treat different types of wastewater but may also be sources of emitters of methane (CH4) and nitrous oxide (N2O). Thus, my objective for this dissertation was to investigate CH4 and N2O fluxes via multiple pathways from the Tres Rios CTW located in Phoenix, AZ, USA. I measured gas fluxes from the CTW along a whole-system gradient (from inflow to outflow) and a within-marsh gradient (shoreline, middle, and open water sites). I found higher diffusive CH4 release in the summer compared to spring and winter seasons. Along the whole-system gradient, I found greater CH4 and N2O emission fluxes near the inflow compared to near the outflow. Within the vegetated marsh, I found greater CH4 emission fluxes at the vegetated marsh subsites compared to the open water. In contrast, N2O emissions were greater at the marsh-open water locations compared to interior marsh. To study the plant-mediated pathway, I constructed small gas chambers fitted to Typha spp. leaves. I found plant-mediated CH4 fluxes were greater near the outflow than near the inflow and that CH4 fluxes were higher from lower sections of plants compared to higher sections. Overall, Typha spp. emitted a mean annual daily flux rate of 358.23 mg CH4 m-2 d-1. Third, using a 30-day mesocosm experiment I studied the effects of three different drydown treatments (2, 7, 14 days) on the fluxes of CH4 and N2O from flooded CTW soils. I found that CH4 fluxes were not significantly affected by soil drydown events. Soils that were dry for 7 days shifted from being N2O sources to sinks upon inundation. As a result, the 7-day drydown soils were sinks while the 14-day drydown soils showed significant N2O release. My results emphasize the importance of studying ecological processes in CTWs to improve their design and management strategies so we can better mitigate their greenhouse gas emissions.

Urban ecosystems cover less than 3% of the Earth's land surface, yet more than half of the human population lives in urban areas. The process of urbanization stresses biodiversity and other ecosystem functions within and far beyond the city. To understand the mechanisms underlying observed changes in biodiversity patterns, several observational and experimental studies were performed in the metropolitan area of Phoenix, Arizona, and the surrounding Sonoran Desert. The first study was comprised of seven years of arthropod monitoring using pitfall traps in common urban land-use types. This study revealed differences in community structure, diversity and abundance over time and between urban and wildland habitats. Urban habitats with high productivity had higher abundances of arthropods, but lower diversity compared to wildland habitats. Arthropod abundance in less-productive urban habitats was positively correlated with precipitation, but abundance in high-productivity urban habitats was completely decoupled from annual fluctuations in precipitation. This study showed the buffering capacity and the habitat heterogeneity of urban areas. To test the mechanisms controlling community diversity and structure in urban areas, a major field experiment was initiated. Productivity of the native shrub Encelia farinosa and bird predation of associated arthropods were manipulated to test whether bottom-up or top-down forces were more important in urban habitats compared to wildland habitats. Abundance, richness and similarity were monitored, revealing clear differences between urban and wildland habitats. An unusually cold and dry first season had a negative effect on plant growth and arthropod abundance. Plants in urban habitats were relatively unaffected by the low temperature. An increase in arthropod abundance with water availability indicated bottom-up forces in wildland habitats, whereas results from bird exclusions suggested that bird predation may not be as prominent in cities as previously thought. In contrast to the pitfall study, arthropod abundance was lower in urban habitats. A second field experiment testing the sheltering effect of urban structures demonstrated that reduced wind speed is an important factor facilitating plant growth in urban areas. A mathematical model incorporating wind, water and temperature demonstrated that urban habitats may be more robust than wildland habitats, supporting the empirical results.

General ecological thought pertaining to plant biology, conservation, and urban areas has rested on two potentially contradictory underlying assumptions. The first is that non-native plants can spread easily from human developments to “pristine” areas. The second is that native plants cannot disperse through developed areas. Both assume anthropogenic changes to ecosystems create conditions that favor non-native plants and hinder native species. However, it is just as likely that anthropogenic alterations of habitats will favor certain groups of plant species with similar functional traits, whether native or not. Migration of plants can be divided into the following stages: dispersal, germination, establishment, reproduction and spread. Functional traits of species determine which are most successful at each of the stages of invasion or range enlargement. I studied the traits that allow both native and non-native plant species to disperse into freeway corridors, germinate, establish, reproduce, and then disperse along those corridors in Phoenix, Arizona. Field methods included seed bank sample collection and germination, vegetation surveys, and seed trapping. I also evaluated concentrations of plant-available nitrate as a result of localized nitrogen deposition. While many plant species found on the roadsides are either landscape varieties or typical weedy species, some uncommon native species and unexpected non-native species were also encountered. Maintenance regimes greatly influence the amount of vegetative cover and species composition along roadsides. Understanding which traits permit success at various stages of the invasion process indicates whether it is native, non-native, or species with particular traits that are likely to move through the city and establish in the desert. In a related case study conducted in Victoria, Australia, transportation professionals and ecologists were surveyed regarding preferences for roadside landscape design. Roadside design and maintenance projects are typically influenced by different groups of transportation professionals at various stages in a linear project cycle. Landscape architects and design professionals have distinct preferences and priorities compared to other transportation professionals and trained ecologists. The case study reveals the need for collaboration throughout the stages of design, construction and maintenance in order to efficiently manage roadsides for multiple priorities.

More than half of all accessible freshwater has been appropriated for human use, and a substantial portion of terrestrial ecosystems have been transformed by human action. These impacts are heaviest in urban ecosystems, where impervious surfaces increase runoff, water delivery and stormflows are managed heavily, and there are substantial anthropogenic sources of nitrogen (N). Urbanization also frequently results in creation of intentional novel ecosystems. These "designed" ecosystems are fashioned to fulfill particular needs of the residents, or ecosystem services. In the Phoenix, Arizona area, the augmentation and redistribution of water has resulted in numerous component ecosystems that are atypical for a desert environment. Because these systems combine N loading with the presence of water, they may be hot spots of biogeochemical activity. The research presented here illustrates the types of hydrological modifications typical of desert cities and documents the extent and distribution of common designed aquatic ecosystems in the Phoenix metropolitan area: artificial lakes and stormwater retention basins. While both ecosystems were designed for other purposes (recreation/aesthetics and flood abatement, respectively), they have the potential to provide the added ecosystem service of N removal via denitrification. However, denitrification in urban lakes is likely to be limited by the rate of diffusion of nitrate into the sediment. Retention basins export some nitrate to groundwater, but grassy basins have higher denitrification rates than xeriscaped ones, due to higher soil moisture and organic matter content. An economic valuation of environmental amenities demonstrates the importance of abundant vegetation, proximity to water, and lower summer temperatures throughout the region. These amenities all may be provided by designed, water-intensive ecosystems. Some ecosystems are specifically designed for multiple uses, but maximizing one ecosystem service often entails trade-offs with other services. Further investigation into the distribution, bundling, and tradeoffs among water-related ecosystem services shows that some types of services are constrained by the hydrogeomorphology of the area, while for others human engineering and the creation of designed ecosystems has enabled the delivery of hydrologic ecosystem services independent of natural constraints.