Threshold logic has been studied by at least two independent group of researchers. One group of researchers studied threshold logic with the intention of building threshold logic circuits. The earliest research to this end was done in the 1960's. The major work at that time focused on studying mathematical properties of threshold logic as no efficient circuit implementations of threshold logic were available. Recently many post-CMOS (Complimentary Metal Oxide Semiconductor) technologies that implement threshold logic have been proposed along with efficient CMOS implementations. This has renewed the effort to develop efficient threshold logic design automation techniques. This work contributes to this ongoing effort. Another group studying threshold logic did so, because the building block of neural networks - the Perceptron, is identical to the threshold element implementing a threshold function. Neural networks are used for various purposes as data classifiers. This work contributes tangentially to this field by proposing new methods and techniques to study and analyze functions implemented by a Perceptron After completion of the Human Genome Project, it has become evident that most biological phenomenon is not caused by the action of single genes, but due to the complex interaction involving a system of genes. In recent times, the `systems approach' for the study of gene systems is gaining popularity. Many different theories from mathematics and computer science has been used for this purpose. Among the systems approaches, the Boolean logic gene model has emerged as the current most popular discrete gene model. This work proposes a new gene model based on threshold logic functions (which are a subset of Boolean logic functions). The biological relevance and utility of this model is argued illustrated by using it to model different in-vivo as well as in-silico gene systems.

Coarse-Grained Reconfigurable Architectures (CGRA) are a promising fabric for improving the performance and power-efficiency of computing devices. CGRAs are composed of components that are well-optimized to execute loops and rotating register file is an example of such a component present in CGRAs. Due to the rotating nature of register indexes in rotating register file, it is very challenging, if at all possible, to hold and properly index memory addresses (pointers) and static values. In this Thesis, different structures for CGRA register files are investigated. Those structures are experimentally compared in terms of performance of mapped applications, design frequency, and area. It is shown that a register file that can logically be partitioned into rotating and non-rotating regions is an excellent choice because it imposes the minimum restriction on underlying CGRA mapping algorithm while resulting in efficient resource utilization.

Software has a great impact on the energy efficiency of any computing system--it can manage the components of a system efficiently or inefficiently. The impact of software is amplified in the context of a wearable computing system used for activity recognition. The design space this platform opens up is immense and encompasses sensors, feature calculations, activity classification algorithms, sleep schedules, and transmission protocols. Design choices in each of these areas impact energy use, overall accuracy, and usefulness of the system. This thesis explores methods software can influence the trade-off between energy consumption and system accuracy. In general the more energy a system consumes the more accurate will be. We explore how finding the transitions between human activities is able to reduce the energy consumption of such systems without reducing much accuracy. We introduce the Log-likelihood Ratio Test as a method to detect transitions, and explore how choices of sensor, feature calculations, and parameters concerning time segmentation affect the accuracy of this method. We discovered an approximate 5X increase in energy efficiency could be achieved with only a 5% decrease in accuracy. We also address how a system's sleep mode, in which the processor enters a low-power state and sensors are turned off, affects a wearable computing platform that does activity recognition. We discuss the energy trade-offs in each stage of the activity recognition process. We find that careful analysis of these parameters can result in great increases in energy efficiency if small compromises in overall accuracy can be tolerated. We call this the ``Great Compromise.'' We found a 6X increase in efficiency with a 7% decrease in accuracy. We then consider how wireless transmission of data affects the overall energy efficiency of a wearable computing platform. We find that design decisions such as feature calculations and grouping size have a great impact on the energy consumption of the system because of the amount of data that is stored and transmitted. For example, storing and transmitting vector-based features such as FFT or DCT do not compress the signal and would use more energy than storing and transmitting the raw signal. The effect of grouping size on energy consumption depends on the feature. For scalar features energy consumption is proportional in the inverse of grouping size, so it's reduced as grouping size goes up. For features that depend on the grouping size, such as FFT, energy increases with the logarithm of grouping size, so energy consumption increases slowly as grouping size increases. We find that compressing data through activity classification and transition detection significantly reduces energy consumption and that the energy consumed for the classification overhead is negligible compared to the energy savings from data compression. We provide mathematical models of energy usage and data generation, and test our ideas using a mobile computing platform, the Texas Instruments Chronos watch.

As the number of cores per chip increases, maintaining cache coherence becomes prohibitive for both power and performance. Non Coherent Cache (NCC) architectures do away with hardware-based cache coherence, but they become difficult to program. Some existing architectures provide a middle ground by providing some shared memory in the hardware. Specifically, the 48-core Intel Single-chip Cloud Computer (SCC) provides some off-chip (DRAM) shared memory some on-chip (SRAM) shared memory. We call such architectures Hybrid Shared Memory, or HSM, manycore architectures. However, how to efficiently execute multi-threaded programs on HSM architectures is an open problem. To be able to execute a multi-threaded program correctly on HSM architectures, the compiler must: i) identify all the shared data and map it to the shared memory, and ii) map the frequently accessed shared data to the on-chip shared memory. This work presents a source-to-source translator written using CETUS that identifies a conservative superset of all the shared data in a multi-threaded application and maps it to the shared memory such that it enables execution on HSM architectures.

Energy consumption of the data centers worldwide is rapidly growing fueled by ever-increasing demand for Cloud computing applications ranging from social networking to e-commerce. Understandably, ensuring energy-efficiency and sustainability of Cloud data centers without compromising performance is important for both economic and environmental reasons. This dissertation develops a cyber-physical multi-tier server and workload management architecture which operates at the local and the global (geo-distributed) data center level. We devise optimization frameworks for each tier to optimize energy consumption, energy cost and carbon footprint of the data centers. The proposed solutions are aware of various energy management tradeoffs that manifest due to the cyber-physical interactions in data centers, while providing provable guarantee on the solutions' computation efficiency and energy/cost efficiency. The local data center level energy management takes into account the impact of server consolidation on the cooling energy, avoids cooling-computing power tradeoff, and optimizes the total energy (computing and cooling energy) considering the data centers' technology trends (servers' power proportionality and cooling system power efficiency). The global data center level cost management explores the diversity of the data centers to minimize the utility cost while satisfying the carbon cap requirement of the Cloud and while dealing with the adversity of the prediction error on the data center parameters. Finally, the synergy of the local and the global data center energy and cost optimization is shown to help towards achieving carbon neutrality (net-zero) in a cost efficient manner.

Most embedded applications are constructed with multiple threads to handle concurrent events. For optimization and debugging of the programs, dynamic program analysis is widely used to collect execution information while the program is running. Unfortunately, the non-deterministic behavior of multithreaded embedded software makes the dynamic analysis difficult. In addition, instrumentation overhead for gathering execution information may change the execution of a program, and lead to distorted analysis results, i.e., probe effect. This thesis presents a framework that tackles the non-determinism and probe effect incurred in dynamic analysis of embedded software. The thesis largely consists of three parts. First of all, we discusses a deterministic replay framework to provide reproducible execution. Once a program execution is recorded, software instrumentation can be safely applied during replay without probe effect. Second, a discussion of probe effect is presented and a simulation-based analysis is proposed to detect execution changes of a program caused by instrumentation overhead. The simulation-based analysis examines if the recording instrumentation changes the original program execution. Lastly, the thesis discusses data race detection algorithms that help to remove data races for correctness of the replay and the simulation-based analysis. The focus is to make the detection efficient for C/C++ programs, and to increase scalability of the detection on multi-core machines.

The availability of a wide range of general purpose as well as accelerator cores on

modern smartphones means that a significant number of applications can be executed

on a smartphone simultaneously, resulting in an ever increasing demand on the memory

subsystem. While the increased computation capability is intended for improving

user experience, memory requests from each concurrent application exhibit unique

memory access patterns as well as specific timing constraints. If not considered, this

could lead to significant memory contention and result in lowered user experience.

This work first analyzes the impact of memory degradation caused by the interference

at the memory system for a broad range of commonly-used smartphone applications.

The real system characterization results show that smartphone applications,

such as web browsing and media playback, suffer significant performance degradation.

This is caused by shared resource contention at the application processor’s last-level

cache, the communication fabric, and the main memory.

Based on the detailed characterization results, rest of this thesis focuses on the

design of an effective memory interference mitigation technique. Since web browsing,

being one of the most commonly-used smartphone applications and represents many

html-based smartphone applications, my thesis focuses on meeting the performance

requirement of a web browser on a smartphone in the presence of background processes

and co-scheduled applications. My thesis proposes a light-weight user space frequency

governor to mitigate the degradation caused by interfering applications, by predicting

the performance and power consumption of web browsing. The governor selects an

optimal energy-efficient frequency setting periodically by using the statically-trained

performance and power models with dynamically-varying architecture and system

conditions, such as the memory access intensity of background processes and/or coscheduled applications, and temperature of cores. The governor has been extensively evaluated on a Nexus 5 smartphone over a diverse range of mobile workloads. By

operating at the most energy-efficient frequency setting in the presence of interference,

energy efficiency is improved by as much as 35% and with an average of 18% compared

to the existing interactive governor, while maintaining the satisfactory performance

of web page loading under 3 seconds.

Soft errors are considered as a key reliability challenge for sub-nano scale transistors. An ideal solution for such a challenge should ultimately eliminate the effect of soft errors from the microprocessor. While forward recovery techniques achieve fast recovery from errors by simply voting out the wrong values, they incur the overhead of three copies execution. Backward recovery techniques only need two copies of execution, but suffer from check-pointing overhead.

In this work I explored the efficiency of integrating check-pointing into the application and the effectiveness of recovery that can be performed upon it. After evaluating the available fine-grained approaches to perform recovery, I am introducing InCheck, an in-application recovery scheme that can be integrated into instruction-duplication based techniques, thus providing a fast error recovery. The proposed technique makes light-weight checkpoints at the basic-block granularity, and uses them for recovery purposes.

To evaluate the effectiveness of the proposed technique, 10,000 fault injection experiments were performed on different hardware components of a modern ARM in-order simulated processor. InCheck was able to recover from all detected errors by replaying about 20 instructions, however, the state of the art recovery scheme failed more than 200 times.

Coarse-grained Reconfigurable Arrays (CGRAs) are promising accelerators capable

of accelerating even non-parallel loops and loops with low trip-counts. One challenge

in compiling for CGRAs is to manage both recurring and nonrecurring variables in

the register file (RF) of the CGRA. Although prior works have managed recurring

variables via rotating RF, they access the nonrecurring variables through either a

global RF or from a constant memory. The former does not scale well, and the latter

degrades the mapping quality. This work proposes a hardware-software codesign

approach in order to manage all the variables in a local nonrotating RF. Hardware

provides modulo addition based indexing mechanism to enable correct addressing

of recurring variables in a nonrotating RF. The compiler determines the number of

registers required for each recurring variable and configures the boundary between the

registers used for recurring and nonrecurring variables. The compiler also pre-loads

the read-only variables and constants into the local registers in the prologue of the

schedule. Synthesis and place-and-route results of the previous and the proposed RF

design show that proposed solution achieves 17% better cycle time. Experiments of

mapping several important and performance-critical loops collected from MiBench

show proposed approach improves performance (through better mapping) by 18%,

compared to using constant memory.

Caches pose a serious limitation in scaling many-core architectures since the demand of area and power for maintaining cache coherence increases rapidly with the number of cores. Scratch-Pad Memories (SPMs) provide a cheaper and lower power alternative that can be used to build a more scalable many-core architecture. The trade-off of substituting SPMs for caches is however that the data must be explicitly managed in software. Heap management on SPM poses a major challenge due to the highly dynamic nature of of heap data access. Most existing heap management techniques implement a software caching scheme on SPM, emulating the behavior of hardware caches. The state-of-the-art heap management scheme implements a 4-way set-associative software cache on SPM for a single program running with one thread on one core. While the technique works correctly, it suffers from signifcant performance overhead. This paper presents a series of compiler-based efficient heap management approaches that reduces heap management overhead through several optimization techniques. Experimental results on benchmarks from MiBenchGuthaus et al. (2001) executed on an SMM processor modeled in gem5Binkert et al. (2011) demonstrate that our approach (implemented in llvm v3.8Lattner and Adve (2004)) can improve execution time by 80% on average compared to the previous state-of-the-art.